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gbouras13 / plassembler

Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
MIT License
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tar: Ignoring unknown extended header keyword #18

Closed Vini2 closed 1 year ago

Vini2 commented 1 year ago

Describe the bug The following messages are displayed when downloading the databases.

tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.quarantine'
tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.quarantine'
tar: Ignoring unknown extended header keyword 'LIBARCHIVE.xattr.com.apple.lastuseddate#PS'

To Reproduce Steps to reproduce the behavior:

  1. Run the command install_database.py -d <path>

Expected behavior If possible suppress these messages. It might be an issue with tar files created on macOS that creates some extra info that is not recognized by GNU tar.

Screenshots

macOS

Screenshot 2023-05-25 at 9 29 07 am

Linux

Screenshot 2023-05-25 at 9 42 58 am
gbouras13 commented 1 year ago

Fixed by #21 PR - subprocess calls removed in favour of native python commands