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gbouras13 / plassembler

Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
MIT License
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Coverage stats in output #51

Open CorentinEscobar opened 6 months ago

CorentinEscobar commented 6 months ago

Hi @gbouras13 ,

I use hybracter to assemble bacterial genomes and plasmids from long read sequencing. I want to assemble single plasmids from long read sequencing but hybracter does not work with only my small plasmids. So I used plassembler to do it.

When I use hybracter, I have an output file with coverage statistics per contig that I don't have when I use plassembler alone.

Do you think you will add this in future updates of plassembler ?

I think this is important information :)

Best regards

Corentin

gbouras13 commented 6 months ago

Hi @CorentinEscobar ,

Thanks for trying both hybracter and Plassembler out mate - this information should be in the summary.tsv file for Plassembler - specifically the mean_depth_long sd_depth_long q25_depth_long q75_depth_long columns.

Is that what you mean? Or something else?

George