two *.egwas files?

[shenweima]

I do eigengwas analysis for my wheat population. The population included two subgroup.

The commond is jar gear.jar eigengwas --bfile MCC_genotype_filter2 --inbred --ev 2 --out wheat125

The result included two files wheat125.1.egwas and wheat125.1.egwas.

Could you tell me which file is right?

[gc5k]

"The result included two files wheat125.1.egwas and wheat125.1.egwas."

Should it read "wheat125.1.egwas" and "wheat125.2.egwas", respectively according to your command?

1 and 2 for the scan for eigenvector 1 and 2 respectively.

You can contact me via chenguobo@gmail.com directly.

[shenweima]

Thanks