Update single cell preprocessing notebook to current best practices

gcfntnu / gcf-workflows

Workflows at Genomics Core Facility Trondheim

BSD 2-Clause "Simplified" License

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Open flatberg opened 10 months ago

flatberg commented 10 months ago

[ ] Update scanpy version
[ ] Update according to sc-best-practices.org
[ ] Substitute umap figure in multiqc report from plaotpca.py to preprocess notebook result