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gconcepcion / pb-assembly

PacBio Assembly Tools Suite
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running falcon and falcon_unzip with HiFi reads #5

Closed sjin09 closed 5 years ago

sjin09 commented 5 years ago

To whom it may concern,

I am attempting to run falcon and falcon_unzip through pb-assembly. The fasta header of CCS/HiFi reads does not seem to be compatible with the daligner that is installed together with pb-assembly. I was wondering when PacBio might push an update for pb-assembly that would run with the HiFI reads.

Regards, Sangjin Lee

skingan commented 5 years ago

Hi Sangjin Lee, We have recently updated pb-assembly to support HiFi data. Are you running the latest code? You can update your environment by running "conda update --all" after you have loaded pb-assembly. If you continue to have problems please file issues here:

https://github.com/PacificBiosciences/pbbioconda/issues

Details on FALCON Unzip for HiFi:

https://github.com/PacificBiosciences/pbbioconda/wiki/HiFi-:--FALCON-Unzip3-User-Guide