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gdrplatform / gDRcore

R package to process dose-response curve data with the GR methods
https://gdrplatform.github.io/gDRcore
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Environment setup instructions don't work for external collaborators #3

Closed ChristopherEeles closed 2 years ago

ChristopherEeles commented 2 years ago

Hello gDR team,

Neither of the methods for setting up the gDRcore development environment work as they are written in the README.

Maybe this is due to lack of access to internal Genetech repositories, I am not sure?

I made the external_collab branch where I have updated the rplatform configuration files to work correctly with only access to the gdrplatform organization. See commits for details of the changes.

Best, Christopher Eeles Software Developer Haibe-Kains Lab PM-Research | UHN

gladkia commented 2 years ago

Hi @ChristopherEeles,

Thanks for the info. I think the problems occurred because you cloned the repo via SSH not https. We've just updated the instructions for the gDR. Please have a look here: https://github.com/gdrplatform/gDR#installation Let us know if the new instructions work for you.

I will do some clean up soon, i.e. remove obsolete instructions in gDRcore. The gDR should be the best repository for our local builds (all the packages we need plus the helper functions in the gDR umbrella package itself).

Sorry for the confusion.

Best, Arek

ChristopherEeles commented 2 years ago

Hi @gladkia,

The updated instructions work correctly.

Best, Chris