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ge11232002 / CNEr

Conserved Noncoding Elements (CNEs) Identification and Visualisation
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extractCNEsFromGRBs function? #18

Closed dpolychr closed 7 years ago

dpolychr commented 7 years ago

Would it be difficult to implement a function that extracts CNEs (that do not overlap either target(s) or bystander(s)) from GRBs? Maybe for zebrafish and chicken elements or the most commmonly used sets of CNEs... I have done this with bedtools (intersectBed) for the human/chicken CNEs overlapping your GRBs. Such CNEs (GRanges) produced by this function could be later passed on to other tools for downstream analyses

dpolychr commented 7 years ago

Implemented by Ge, see makeGRBs function