ge11232002 / CNEr

Conserved Noncoding Elements (CNEs) Identification and Visualisation
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Error installing on a miniconda environment #27

Open cihaterdogan opened 11 months ago

cihaterdogan commented 11 months ago

Hi!

I´m trying to install a package where CNEr is a dependency. I´m receiving an error on the installation while installing the package on a miniconda environment.

miniconda version 4.12.0 loaded.
Downloading GitHub repo ge11232002/CNEr@HEAD
* installing *source* package ‘CNEr’ ...
** using staged installation
** libs
using C compiler: ‘x86_64-conda-linux-gnu-cc (conda-forge gcc 13.2.0-2) 13.2.0’
ucsc/obscure.c: In function 'incCounterFile':
ucsc/obscure.c:33:5: warning: ignoring return value of 'fwrite' declared with attribute 'warn_unused_result' [-Wunused-result]
   33 |     fwrite(&val, sizeof(val), 1, f);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ld: S4Vectors_stubs.o: unable to initialize decompress status for section .debug_info
/usr/bin/ld: S4Vectors_stubs.o: unable to initialize decompress status for section .debug_info
/usr/bin/ld: S4Vectors_stubs.o: unable to initialize decompress status for section .debug_info
/usr/bin/ld: S4Vectors_stubs.o: unable to initialize decompress status for section .debug_info
S4Vectors_stubs.o: file not recognized: File format not recognized
collect2: error: ld returned 1 exit status
make: *** [/N/.../conda_envs/.../lib/R/share/make/shlib.mk:10: CNEr.so] Error 1
ERROR: compilation failed for package ‘CNEr’
* removing ‘/N/.../conda_envs/.../lib/R/library/CNEr’
Warning message:
In i.p(...) :
  installation of package ‘/tmp/Rtmpa74nkp/file313973207190d6/CNEr_1.33.1.tar.gz’ had non-zero exit status

Do you have any suggestions? Thanks.