jamdili1
commented
4 years ago Excellent thank you! I'll be sure to add some bio terms.
On Fri, Feb 28, 2020 at 2:08 PM Brooke Anderson notifications@github.com wrote:
@jamdili1 https://github.com/jamdili1 : We have been noticing that some of the bolded words in the print version do not show up online, but we do want the students to include all bolded terms from the print version. To help you out, here are the bolded terms in the print version for Chapter 13 (note: these aren't due for a while, this is just for whenever you are ready):
- experimental design
- preliminary data
- controlled experiment
- study
- observational study
- randomized controlled trial
- prospective (in the context of a scientific study)
- meta-analysis
- noise (in the context of error)
- bias (in the context of error)
- error (in the context of statistics)
- variability
- latent factors
- batch effects
- technical replicates
- biological replicates
- confounding
- efficient (in the context of a statistical measurement)
- treatment (in the context of an experiment)
- power simulations
- paired designs
- matched designs
- effect size
- power calculations
- quality
- fitness for purpose
- quality metric
- longitudinal data
- hidden Markov models
- filtering out / down-weighting
- RStudio
- RMarkdown
- Jupyter
- version control
- tidy data
- wide format (in the context of a two-dimensional data table)
- long format (in the context of a two-dimensional data table)
- untidy data
- sufficiency (in the context of information in data)
- premature optimization
- vectorization
- parallelization
- out-of-memory data
- chunking (in the context of analyzing large data)
- sequential design
- git
- GitHub
Be sure to look through the old vocabulary lists---if any terms have already been defined, just copy that definition. As we move to the later chapters, this is the case for a number of the terms.
Also, we have been asking students to add a few of the relevant biological terms from the chapter, even though they aren't bolded. Some that would make sense for Chapter 13 are (you may pick which you think will be most helpful to the students):
- model system (in the context of a biological experiment)
- cell line
- media (in the context of a biological experiment)
- protocol
- GC content
- homopolymer stretch
- palindrome
- nanopore
- enzyme
- TPKM (in the context of an RNA-Seq experiment)
- inflammation
- experimental reagents
- base calling quality (in the context of sequencing)
- fraction of aligned reads (in the context of sequencing)
- read length (in the context of sequencing)
- read counts (in the context of sequencing)
- Molecular Signatures Database
- gene set enrichment analysis
- chromatin state
- mRNA
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geanders
@jamdili1 : We have been noticing that some of the bolded words in the print version do not show up online, but we do want the students to include all bolded terms from the print version. To help you out, here are the bolded terms in the print version for Chapter 13 (note: these aren't due for a while, this is just for whenever you are ready):
Be sure to look through the old vocabulary lists---if any terms have already been defined, just copy that definition. As we move to the later chapters, this is the case for a number of the terms.
Also, we have been asking students to add a few of the relevant biological terms from the chapter, even though they aren't bolded. Some that would make sense for Chapter 13 are (you may pick which you think will be most helpful to the students):