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gear-genomics / dicey

In-silico PCR, primer design and padlock design for in-situ sequencing
https://www.gear-genomics.com/
GNU General Public License v3.0
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dicey chop arguments for creating reads for mappability map #10

Closed bzhang19 closed 1 year ago

bzhang19 commented 1 year ago

Hello! I'm interested in generating a mappability map for a genome for Delly germinal CNV calling. There are several arguments for dicey chop including insert size, read length etc. Would I need to set those arguments to whatever match the reads that I'll be using or should they just remind default? Thank you so much for your time.

tobiasrausch commented 1 year ago

For standard illumina paired-end libraries the defaults are fine.