Open fabern opened 1 week ago
In order to use FluxDataKit with the BiomeE part of the rsofun package some additional input quantities need to be defined. These are documented in the rsofun package: https://geco-bern.github.io/rsofun/reference/biomee_p_model_drivers.html
rsofun
To make it work with pmodel, some default parameters need to be prescribed for params_siml: https://github.com/geco-bern/FluxDataKit/blob/e0223b39d585e978d2cef2b875cbb9e82146bba5/R/fdk_format_drivers.R#L27-L39
params_siml
[ ] To make it work with BiomE-model in a similar way, some additional parameters would need to be provided, too:
site_info
lon
lat
evl
year_start
year_end
classid
c4
whc
koeppen_code
igbp_land_use
plant_functional_type
date_start
date_end
spinup
spinupyears
recycle
firstyeartrend
nyeartrend
steps_per_day
do_U_shaped_mortality
update_annualLAImax
do_closedN_run
method_photosynth
method_mortality
params_tile
soiltype
FLDCAP
WILTPT
K1
K2
K_nitrogen
MLmixRatio
etaN
LMAmin
fsc_fine
fsc_wood
GR_factor
l_fract
retransN
f_initialBSW
f_N_add
tf_base
par_mort
par_mort_under
params_species
lifeform
phenotype
pt
alpha_FR
rho_FR
root_r
root_zeta
Kw_root
leaf_size
Vmax
Vannual
wet_leaf_dreg
m_cond
alpha_phot
gamma_L
gamma_LN
gamma_SW
gamma_FR
tc_crit
tc_crit_on
gdd_crit
betaON
betaOFF
alphaHT
thetaHT
alphaCA
thetaCA
alphaBM
thetaBM
seedlingsize
maturalage
v_seed
mortrate_d_c
mortrate_d_u
LMA
leafLS
LNbase
CNleafsupport
rho_wood
taperfactor
lAImax
tauNSC
fNSNmax
phiCSA
CNleaf0
CNsw0
CNwood0
CNroot0
CNseed0
Nfixrate0
NfixCost0
internal_gap_frac
kphio
phiRL
LAI_light
params_soil
type
GMD
GSD
vwc_sat
chb
psi_sat_ref
k_sat_ref
alphaSoil
heat_capacity_dry
init_cohort
init_n_cohorts
init_cohort_species
init_cohort_nindivs
init_cohort_bl
init_cohort_br
init_cohort_bsw
init_cohort_bHW
init_cohort_seedC
init_cohort_nsc
init_soil
init_fast_soil_C
init_slow_soil_C
init_Nmineral
N_input
In order to use FluxDataKit with the BiomeE part of the
rsofun
package some additional input quantities need to be defined. These are documented in the rsofun package: https://geco-bern.github.io/rsofun/reference/biomee_p_model_drivers.htmlTo make it work with pmodel, some default parameters need to be prescribed for
params_siml
: https://github.com/geco-bern/FluxDataKit/blob/e0223b39d585e978d2cef2b875cbb9e82146bba5/R/fdk_format_drivers.R#L27-L39[ ] To make it work with BiomE-model in a similar way, some additional parameters would need to be provided, too:
site_info
containing:lon
,lat
,evl
,year_start
,year_end
,classid
,c4
,whc
,koeppen_code
,igbp_land_use
,plant_functional_type
,date_start
, anddate_end
params_siml
containing:spinup
,spinupyears
,recycle
,firstyeartrend
,nyeartrend
,steps_per_day
,do_U_shaped_mortality
,update_annualLAImax
,do_closedN_run
,method_photosynth
,method_mortality
params_tile
containing:soiltype
,FLDCAP
,WILTPT
,K1
,K2
,K_nitrogen
,MLmixRatio
,etaN
,LMAmin
,fsc_fine
,fsc_wood
,GR_factor
,l_fract
,retransN
,f_initialBSW
,f_N_add
,tf_base
,par_mort
,par_mort_under
params_species
containing:lifeform
,phenotype
,pt
,alpha_FR
,rho_FR
,root_r
,root_zeta
,Kw_root
,leaf_size
,Vmax
,Vannual
,wet_leaf_dreg
,m_cond
,alpha_phot
,gamma_L
,gamma_LN
,gamma_SW
,gamma_FR
,tc_crit
,tc_crit_on
,gdd_crit
,betaON
,betaOFF
,alphaHT
,thetaHT
,alphaCA
,thetaCA
,alphaBM
,thetaBM
,seedlingsize
,maturalage
,v_seed
,mortrate_d_c
,mortrate_d_u
,LMA
,leafLS
,LNbase
,CNleafsupport
,rho_wood
,taperfactor
,lAImax
,tauNSC
,fNSNmax
,phiCSA
,CNleaf0
,CNsw0
,CNwood0
,CNroot0
,CNseed0
,Nfixrate0
,NfixCost0
,internal_gap_frac
,kphio
,phiRL
,LAI_light
params_soil
containing:type
,GMD
,GSD
,vwc_sat
,chb
,psi_sat_ref
,k_sat_ref
,alphaSoil
,heat_capacity_dry
init_cohort
containing:init_n_cohorts
,init_cohort_species
,init_cohort_nindivs
,init_cohort_bl
,init_cohort_br
,init_cohort_bsw
,init_cohort_bHW
,init_cohort_seedC
,init_cohort_nsc
init_soil
containing:init_fast_soil_C
,init_slow_soil_C
,init_Nmineral
,N_input