geez0x1
commented
6 years ago Closed geez0x1 closed 6 years ago
geez0x1
commented
6 years ago 
joernmalzahn
commented
6 years ago ----------------
ChecksumTest
----------------
ans =
4×6 table
Name Passed Failed Incomplete Duration Details
_____________________________________ ______ ______ __________ ________ ____________
'cjtChecksumTest/testLoremIpsumArray' false true false 1.1672 [1×1 struct]
'cjtChecksumTest/testLoremIpsumFile' false true false 0.26024 [1×1 struct]
'cjtChecksumTest/testMagic10Array' false true false 0.3221 [1×1 struct]
'cjtChecksumTest/testMagic10File' true false false 0.023008 [1×1 struct]
Passed: 13
Failed: 13
Incomplete: 10This one might be the most consequential fail. If the checksum is not computed correctly, the remaining fails might not be meaningful. Unfortunateley, I cannot reproduce these on my machine. They all pass. Interestingly all but one seem to fail on yours. It might be a version issue and related to the way the checksums are computed. Let's look into that together.
----------------
SimulinkLibrary
----------------
ans =
9×6 table
Name Passed Failed Incomplete Duration Details
_______________________________________ ______ ______ __________ ________ ____________
'cjtSimulinkLibraryTest/testBuiltJoint' false true true 11.287 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_02' false true true 5.8004 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_03' false true true 1.745 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_04' false true true 3.0596 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_05' false true true 2.4879 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_06' false true true 4.567 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_07' false true true 2.3533 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_08' false true true 4.0973 [1×1 struct]
'cjtSimulinkLibraryTest/testExample_09' false true true 3.0231 They fail on my machine as well. These fail, because we have not yet updated the checksums after updating model files, right?
----------------
DataSheetGenerator
----------------
ans =
1×6 table
Name Passed Failed Incomplete Duration Details
________________________________________________ ______ ______ __________ ________ ____________
'cjtDataSheetGeneratorTest/testTorqueSpeedCurve' false true true 79.29 [1×1 struct]
It passes on my machine. Two theories about that one: a) The problem of checksums not being computed properly. b) Inkscape and / or tex compiler not properly set-up. I should write a script / guide that helps with that.
Can you please provide more infos by running this one: runtests('cjtDataSheetGeneratorTest/testTorqueSpeedCurve')
geez0x1
commented
6 years ago Another point is the following:
Warning: The character encoding windows-1252 used by model 'simulinkBlockLibraryTest' differs from the MATLAB session
character encoding UTF-8. To check for problems which might corrupt the model use the "Simulink Model File Integrity"
checks in the Model Advisor. That character encoding is absurd, UTF-8 is the way to go. However, this should not have an effect, but with MATLAB you never know..
I had a look at the checksumTest ones first though, if that doesn't work everything else will fail as well like you mentioned. I can confirm that the checksum computed by MATLAB for the file is correct:
wesley@machine:/somepath/CompliantJointToolbox$ md5sum tmp_cjt_compute_checksum.txt
93b6b07e10265782dc1b41930b19352c tmp_cjt_compute_checksum.txtwhich is the same md5 hash that MATLAB computes. Could you:
tmp_cjt_compute_checksum.txt file so I can do a binary comparison.geez0x1
commented
6 years ago checksumTest now fixed (see referenced issue)
geez0x1
commented
6 years ago Full output from runtests('cjtDataSheetGeneratorTest/testTorqueSpeedCurve'):
Joint built and written to /data/nextCloud/IIT/SEA_control/CompliantJointToolbox/build/cjt_Orange_80_6000_full_dyn.m
Warning: MATLAB has disabled some advanced graphics rendering features by switching to software OpenGL. For more
information, click here.
h =
Surface (t_{max} [s] to max. temperature) with properties:
EdgeColor: [0 0 0]
LineStyle: '-'
FaceColor: 'flat'
FaceLighting: 'flat'
FaceAlpha: 1
XData: [100×101 double]
YData: [100×101 double]
ZData: [100×101 double]
CData: [100×101 double]
Show all properties
Datasheet compilation failed. See compiler output for details:
pdflatex: /home/wesley/MATLAB/R2017a/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by pdflatex)
pdflatex: /home/wesley/MATLAB/R2017a/bin/glnxa64/libtiff.so.5: no version information available (required by /usr/lib/x86_64-linux-gnu/libpoppler.so.73)
Datasheet compilation failed. See compiler output for details:
pdflatex: /home/wesley/MATLAB/R2017a/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by pdflatex)
pdflatex: /home/wesley/MATLAB/R2017a/bin/glnxa64/libtiff.so.5: no version information available (required by /usr/lib/x86_64-linux-gnu/libpoppler.so.73)
Datasheet compilation failed. See compiler output for details:
pdflatex: /home/wesley/MATLAB/R2017a/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by pdflatex)
pdflatex: /home/wesley/MATLAB/R2017a/bin/glnxa64/libtiff.so.5: no version information available (required by /usr/lib/x86_64-linux-gnu/libpoppler.so.73)
================================================================================
Error occurred in cjtDataSheetGeneratorTest/testTorqueSpeedCurve and it did not run to completion.
---------
Error ID:
---------
'MATLAB:COPYFILE:OSError'
--------------
Error Details:
--------------
Error using copyfile
cp: cannot stat '/data/nextCloud/IIT/SEA_control/CompliantJointToolbox/cjtdsheet.pdf': No such file or directory
Error in dataSheetGenerator/generateDataSheet (line 1189)
copyfile([fName,'.pdf'],destFName);
Error in cjtDataSheetGeneratorTest>testTorqueSpeedCurve (line 140)
dsg.generateDataSheet;
================================================================================
.
Done cjtDataSheetGeneratorTest
__________
Failure Summary:
Name Failed Incomplete Reason(s)
===============================================================================
cjtDataSheetGeneratorTest/testTorqueSpeedCurve X X Errored.
ans =
TestResult with properties:
Name: 'cjtDataSheetGeneratorTest/testTorqueSpeedCurve'
Passed: 0
Failed: 1
Incomplete: 1
Duration: 72.5485
Details: [1×1 struct]
Totals:
0 Passed, 1 Failed, 1 Incomplete.
72.5485 seconds testing time.The problem originates here:
pdflatex: /home/wesley/MATLAB/R2017a/sys/os/glnxa64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by pdflatex)
pdflatex: /home/wesley/MATLAB/R2017a/bin/glnxa64/libtiff.so.5: no version information available (required by /usr/lib/x86_64-linux-gnu/libpoppler.so.73)It looks like MATLAB is trying to use some outdated stdc++ library that it includes itself, which clashes with my system. I'm not sure why it's trying to do that though, since obviously stdc++ is present on the system.
geez0x1
commented
6 years ago Apparently this issue has been around for 6+ years. Latest thread I could find on it confirms my suspicion:
https://nl.mathworks.com/matlabcentral/answers/329796-issue-with-libstdc-so-6
I'm not sure how to fix it for our users; perhaps a warning will suffice, which I have now added and will commit in a moment:
-------
Warning: If the above error references libstdc++, this issue arises due to MATLAB including libraries which are too old for your system. Try removing the following symlinks:
- /MATLAB/sys/os/glnxa64/libstdc++.so.6
- /MATLAB/bin/glnxa64/libtiff.so.5
See also: https://mathworks.com/matlabcentral/answers/329796-issue-with-libstdc-so-6
-------After fixing the issue, there are still LaTeX compilation issues on my system. I would guess due to missing LaTeX packages?
Datasheet compilation failed. See compiler output for details:
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./cjtdsheet.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 9 language(s) loaded.
(./cjtdsheet.cls
Document Class: cjtdsheet 2016/10/02 version 0.1 CompliantJointToolbox Datashee
t
(./cjtdsheet.cfg) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty))
(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty))
(/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty))
No file cjtdsheet.aux.
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
Underfull \hbox (badness 10000) in paragraph at lines 6--7
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
Underfull \hbox (badness 10000) in paragraph at lines 50--50
[]|\T1/cmr/m/n/10 Nm
Overfull \hbox (2.44548pt too wide) in paragraph at lines 50--51
[][]
Overfull \hbox (4.21404pt too wide) in paragraph at lines 96--96
[]|\T1/cmr/m/n/10 rad/Nms|
Overfull \hbox (2.44548pt too wide) in paragraph at lines 96--97
[][]
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map} <./torqueSpeedCurve.pdf>]
LaTeX Warning: Reference `fig:TorqueSpeedCurve' on page 2 undefined on input li
ne 114.
LaTeX Warning: Reference `fig:EfficiencyCurve' on page 2 undefined on input lin
e 137.
[2 <./efficiencyCurve.pdf>]
LaTeX Warning: Reference `fig:ThermalCharacteristics' on page 3 undefined on in
put line 153.
LaTeX Warning: Reference `fig:ThermalCharacteristics' on page 3 undefined on in
put line 155.
! Missing $ inserted.
<inserted text>
$
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...th {#1}\let \f@size #2\selectfont #3}
}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...h {#1}\let \f@size #2\selectfont #3}}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\text@ ...e {\textdef@ \displaystyle \f@size {#1}}
{\textdef@ \textstyle \f@s...
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Missing $ inserted.
<inserted text>
$
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...th {#1}\let \f@size #2\selectfont #3}
}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...h {#1}\let \f@size #2\selectfont #3}}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\text@ ...xtstyle \f@size {\firstchoice@false #1}}
{\textdef@ \textstyle \sf@...
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Missing $ inserted.
<inserted text>
$
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...th {#1}\let \f@size #2\selectfont #3}
}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...h {#1}\let \f@size #2\selectfont #3}}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\text@ ...tstyle \sf@size {\firstchoice@false #1}}
{\textdef@ \textstyle \ssf...
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Missing $ inserted.
<inserted text>
$
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...th {#1}\let \f@size #2\selectfont #3}
}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\textdef@ ...h {#1}\let \f@size #2\selectfont #3}}
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\text@ ...style \ssf@size {\firstchoice@false #1}}
\check@mathfonts }
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
\text@ ...firstchoice@false #1}}\check@mathfonts }
l.155 ...ambient temperature ($25\:{^{\text{\circ}
}}$C) to $\symTmpWindMax$....
! Extra }, or forgotten $.
l.155 ...mbient temperature ($25\:{^{\text{\circ}}
}$C) to $\symTmpWindMax$. ...
! Extra }, or forgotten $.
l.155 ...bient temperature ($25\:{^{\text{\circ}}}
$C) to $\symTmpWindMax$. I...
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing $ inserted.
<inserted text>
$
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing $ inserted.
<inserted text>
$
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing $ inserted.
<inserted text>
$
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing $ inserted.
<inserted text>
$
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing { inserted.
<to be read again>
$
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing { inserted.
<to be read again>
$
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
! Missing { inserted.
<to be read again>
$
l.161 \end{multicols}
! Missing } inserted.
<inserted text>
}
l.161 \end{multicols}
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l.161 \end{multicols}
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l.161 \end{multicols}
LaTeX Warning: Reference `fig:TorqueSpeedCurve' on page 3 undefined on input li
ne 169.
LaTeX Warning: Reference `fig:TorqueBandwidthLocked' on page 3 undefined on inp
ut line 171.
LaTeX Warning: Reference `sec:ThermalChar' on page 3 undefined on input line 17
1.
LaTeX Warning: Reference `fig:TorqueBandwidthLoad' on page 3 undefined on input
line 173.
LaTeX Warning: Reference `fig:TorqueBandwidthLocked' on page 3 undefined on inp
ut line 173.
[3 <./thermalChar.pdf>]
LaTeX Warning: Citation `Malzahn_2017' on page 4 undefined on input line 175.
[4 <./torFreqLock.pdf>] [5 <./torFreqLoad.pdf>]
LaTeX Warning: Reference `fig:TorqueSpeedCurve' on page 6 undefined on input li
ne 292.
No file cjtdsheet.bbl.
[6] (./cjtdsheet.aux)
LaTeX Warning: There were undefined references.
LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
)
(see the transcript file for additional information) </home/wesley/.texlive2017
/texmf-var/fonts/pk/ljfour/jknappen/ec/ecti1000.600pk> </home/wesley/.texlive20
17/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1200.600pk> </home/wesley/.texlive
2017/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1728.600pk> </home/wesley/.texli
ve2017/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbi1000.600pk> </home/wesley/.tex
live2017/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1000.600pk> </home/wesley/.t
exlive2017/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1000.600pk> </home/wesley/
.texlive2017/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx2488.600pk></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmsy7.pfb>
Output written on cjtdsheet.pdf (6 pages, 1619957 bytes).
SyncTeX written on cjtdsheet.synctex.
Transcript written on cjtdsheet.log.
-------
Warning: If the above error references libstdc++, this issue arises due to MATLAB including libraries which are too old for your system. Try removing the following symlinks:
- /MATLAB/sys/os/glnxa64/libstdc++.so.6
- /MATLAB/bin/glnxa64/libtiff.so.5
See also: https://mathworks.com/matlabcentral/answers/329796-issue-with-libstdc-so-6
-------Indeed, the \circ thing (probably a new one added later) was the issue. New output from
runtests('cjtDataSheetGeneratorTest/testTorqueSpeedCurve'):
Done cjtDataSheetGeneratorTest
__________
ans =
TestResult with properties:
Name: 'cjtDataSheetGeneratorTest/testTorqueSpeedCurve'
Passed: 1
Failed: 0
Incomplete: 0
Duration: 63.3217
Details: [1×1 struct]
Totals:
1 Passed, 0 Failed, 0 Incomplete.
63.3217 seconds testing time.Fixed.