AttributeError: module 'Bio.Seq' has no attribute 'IUPAC'

[EllBaum]

Version of Integron_Finder: 2.0

OS Linux

Expected behavior Output of the "integron_finder -h" command.

Actual behavior Error message about the Bio.Seq lacking the IUPAC attribute.

Steps to reproduce behavior $ integron_finder -h Traceback (most recent call last): File env/bin/integron_finder", line 7, in from integron_finder.scripts.finder import main File "env/lib/python3.10/site-packages/integron_finder/scripts/finder.py", line 51, in from integron_finder import utils File "env/lib/python3.10/site-packages/integron_finder/utils.py", line 62, in read_multi_prot_fasta = make_multi_fasta_reader(Seq.IUPAC.extended_protein) AttributeError: module 'Bio.Seq' has no attribute 'IUPAC'

The package was installed via conda on an external server and the Biopython version is 1.78, as stated on the dependency list, and does not contain the module alphabet with the IUPAC attribute.

I would much appreciate your help resolving this issue.

Thank you,

Ella Baumer

[bneron]

try with IF version 2.0.2 which should fix this problem

[EllBaum]

Thank you!