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gem-pasteur / Integron_Finder

Bioinformatics tool to find integrons in bacterial genomes
GNU General Public License v3.0
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How to classify Integrons？ #116

Closed xdli009 closed 4 months ago

xdli009 commented 4 months ago

Hello,

I would like to know if this tool can classify integrons, for example, distinguishing which ones are class 1 integrons.

Thank you so much!

jeanrjc commented 4 months ago

Hello,

Using the option --promoter-attI will annotate known promoters and attI sites from integrons classe 1, 2, 3 (when known). Otherwise, IntegronFinder does not classify integrons other than complete/CALINs/In0.