gem-pasteur / Integron_Finder

Bioinformatics tool to find integrons in bacterial genomes
GNU General Public License v3.0
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Accept multiple fasta file #17

Closed jeanrjc closed 6 years ago

jeanrjc commented 8 years ago

So far IntegronFinder accepts only single fasta file. It can be convenient to implement a search on a multiple fasta file.

cachapuz2001 commented 8 years ago

Cela ne devrait pas être difficile à changer non? Suffit de boucler sur les séquences? Sauf si tu veux avoir une notion de contiguïté entre contigs, mais a mon avis cela ne vaut pas trop la peine a+ ed

On 20 Jun 2016, at 13:18 , jeanrjc notifications@github.com wrote:

So far IntegronFinder accepts only single fasta file. It can be convenient to implement a search on a multiple fasta file.

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######################################################## Eduardo Rocha, Microbial Evolutionary Genomics, Institut Pasteur, CNRS UMR3525, 25 rue Dr Roux, 75724 Paris. erocha@pasteur.fr, Tel/Fax 01 40 61 33 53/01 45 68 87 27 https://research.pasteur.fr/en/member/eduardo-rocha/ ########################################################

Sanrrone commented 7 years ago

iterate with (for example), all refseq database will cause have more files in the directory that basic command unix can handle, improving integronFinder to accept multifasta is more than convenient.

jeanrjc commented 6 years ago

Closing to remove duplicated issue. Issue #41 is the main issue now.