fillna="na" error if pandas version 0.19.0, solved by downgrading pandas to 0.18.0

SwapnilDoijad commented 8 years ago

After upgrading pandas to 0.19.0 following error occurred

In replicon ABC-1, there are:

1 complete integron(s) found with a total 2 attC site(s)
0 CALIN element(s) found with a total of 0 attC site(s)
0 In0 element(s) found with a total of 0 attC site Traceback (most recent call last): File "/usr/local/bin/integron_finder", line 1746, in integrons_describe.to_csv(os.path.join(out_dir_ok, outfile), sep="\t", index=0, fillna="na") TypeError: to_csv() got an unexpected keyword argument 'fillna'

Currently, the error got resolved by downgrading pandas to 0.18.0

Any other option to get Integron_Finder work with upgraded pandas?

jeanrjc commented 8 years ago

This is going to be fixed in the next release. Meanwhile, you can use pandas 0.18.0 (as said by @SwapnilDoijad )

jeanrjc commented 8 years ago

Release 1.5.1 fix this issue.

gem-pasteur / Integron_Finder