Add threshold of number of attC to keep a CALIN

gem-pasteur / Integron_Finder

Bioinformatics tool to find integrons in bacterial genomes

GNU General Public License v3.0

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Closed asetGem closed 6 years ago

asetGem commented 7 years ago

[x] By default, keep only CALINs with at least 2 attC sites.
[x] Add option --single-attc to keep all CALINs even if only 1 attC instead to add option --single-attc add more versatile option --calin-threshold to keep only calin with attC number greater than this value.

bneron commented 6 years ago

instead of --single-attc option add --attc-threshold which allow to specify any number of calin