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gem-pasteur / Integron_Finder

Bioinformatics tool to find integrons in bacterial genomes
GNU General Public License v3.0
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Trouble installing integron_finder using pip install #63

Closed aaron-bio closed 5 years ago

aaron-bio commented 5 years ago

Having some trouble installing integron_finder using pip. Also noticed that the version available on pip is 1.5.1 instead of 2.0.

Version of Integron_Finder: 1.5.1

Write here the output of integron_finder --version.

OS

Expected behavior

Actual behavior

Could not install integron_finder with pip install

Steps to reproduce behavior

Tried installing integron_finder using pip command: pip install integron_finder

Relevant logs and/or screenshots

ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/j6/zzqx0b4s18j2754q6c7yjs7h0000gw/T/pip-install-rl7de4dj/integron-finder/setup.py'"'"'; file='"'"'/private/var/folders/j6/zzqx0b4s18j2754q6c7yjs7h0000gw/T/pip-install-rl7de4dj/integron-finder/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base pip-egg-info cwd: /private/var/folders/j6/zzqx0b4s18j2754q6c7yjs7h0000gw/T/pip-install-rl7de4dj/integron-finder/ Complete output (1 lines): Sorry, Python 3 is not supported yet

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

jeanrjc commented 5 years ago

Hello, IntegronFinder version 2 is not released officially yet, but you can install it and use it. See Issue #57 for how to install the version 2. You need python 2.7 for the version 1.5, I guess that's why it failed.