gem-pasteur / Integron_Finder

Bioinformatics tool to find integrons in bacterial genomes
GNU General Public License v3.0
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in summary output, add the size of contig #68

Closed jeanrjc closed 3 years ago

jeanrjc commented 5 years ago

observation: we don't have the size of the searched replicon in .summary file consequences: we need to do expensive merge to get the size again, compare to the cheap cost to just output the size at running time. But is it a real necessity ? Might be interesting when distributing integron datasets for people to analyse, or we should create a metadata file ? eg.:

ID_replicon topology size success
replicon1 circ 123456 True
replicon2 lin 12 False

impact: None