It is possible that integron_finder finds attC site with the default mode under the threshold e-value, but this threshold may be exceeded with local_max option, and the attC is then discarded, which leads to error as in issue #71
We need to make sure that attC sites found in the first pass should appear at the end, even if they are not found anymore afterward.
Or at least handle this situation better such that it does not lead to an error.
It is possible that
integron_finderfinds attC site with the default mode under the threshold e-value, but this threshold may be exceeded with local_max option, and the attC is then discarded, which leads to error as in issue #71We need to make sure that attC sites found in the first pass should appear at the end, even if they are not found anymore afterward.
Or at least handle this situation better such that it does not lead to an error.