gem-pasteur / Integron_Finder

Bioinformatics tool to find integrons in bacterial genomes
GNU General Public License v3.0
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Keep attC sites even if the evalue change with local_max #84

Closed jeanrjc closed 3 years ago

jeanrjc commented 3 years ago

It is possible that integron_finder finds attC site with the default mode under the threshold e-value, but this threshold may be exceeded with local_max option, and the attC is then discarded, which leads to error as in issue #71

We need to make sure that attC sites found in the first pass should appear at the end, even if they are not found anymore afterward.

Or at least handle this situation better such that it does not lead to an error.