In some case, probably when there is an assembly error, a circular replicon is composed of attC sites all along (like a big CALIN element).
It leads IntegronFinder with the local_max option to search indefinitely for integron by searching over and over around the chromosome.
We should have a check that IF should stop local max once it passed over the edge of the replicon twice.
In some case, probably when there is an assembly error, a circular replicon is composed of attC sites all along (like a big CALIN element). It leads IntegronFinder with the local_max option to search indefinitely for integron by searching over and over around the chromosome. We should have a check that IF should stop local max once it passed over the edge of the replicon twice.
One can reproduce the problem with this plasmid : https://www.ncbi.nlm.nih.gov/nuccore/NZ_CP016323.1?report=fasta