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gencorefacility / reform

Modify existing reference fasta and gff3/gtf files to include a new sequence
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index error: list index out of range #1

Closed naixiangxiaozi closed 5 years ago

naixiangxiaozi commented 5 years ago

To whom it may concern, The reform is perfect for our analysis! And we are the newer one to use this and don't know how to solve the problem that shows " index error: list index out of range." Could you please help us to solve this problem and here is the screenshot of the error shows 8711545248167_ pic_hd

mohammedkhalfan commented 5 years ago

It looks like it's not able to parse in_fasta for some reason, are you able to share the file (Nkx2-5_ex2_reform.fa) with me?

naixiangxiaozi commented 5 years ago

Thank you for your quick response.

The attached files are used for the deletion of a reference sequence and addition of the novel sequence.

Could you please help us to solve the problem.

Thank you!

Best,

Hua

From: mohammedkhalfan notifications@github.com Sent: Wednesday, December 19, 2018 6:23:31 PM To: gencorefacility/reform Cc: Li, Hua; Author Subject: Re: [gencorefacility/reform] index error: list index out of range (#1)

It looks like it's not able to parse in_fasta for some reason, are you able to share the file (Nkx2-5_ex2_reform.fa) with me?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/gencorefacility/reform/issues/1#issuecomment-448804469, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AoWNAlTIYbN_hbcW8nYkDtCp4Z3UdPpLks5u6tiDgaJpZM4ZbJPW.

mohammedkhalfan commented 5 years ago

Hi Hua, please email me the files at [email address hidden]