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gencorefacility / reform

Modify existing reference fasta and gff3/gtf files to include a new sequence
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Sequential processing -- STEP 1 #13

Closed YuWei-CH closed 3 months ago

YuWei-CH commented 4 months ago
  1. Support multiple input files in argparse, name of files will be store in lists.
  2. Add automatic deletion of reformed files in test_reform.py. This keeps the folder with only input and gold files.
  3. Add a test case 15 which combine test case 9,10,11 for sequential processing.
  4. Add temporary code (lines 13 through 18) to reform.py to keep single case running. It will be removed when Sequential processing is complete.