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GeneNetwork (2nd generation)
http://gn2.genenetwork.org/
GNU Affero General Public License v3.0
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Collection creation and expansion error #798

Open DowGlikman opened 1 year ago

DowGlikman commented 1 year ago

in the course of trying to create a collection to continue with a correlation analysis I am being held off by adding probes to a collection and end up getting an error: 

 GeneNetwork tux01:gene:2.11-rc2 
    405 Method Not Allowed: The method is not allowed for the requested URL. (error)

Tried various open access and private collection probes.

fredmanglis commented 1 year ago

@DowGlikman I just tried reproducing this on https://genenetwork.org. I cannot seem to be able to produce the error.

Would you please provide a step-by-step process to reproduce the error. Indicate also whether you experience the issue when logged in or otherwise.

zsloan commented 1 year ago

Ah, I think I found where they're talking about. Adding PCA traits in correlation matrix. I'll take a look.

zsloan commented 1 year ago

This should be fixed now; let me know if you still encounter the problem anywhere.

DowGlikman commented 1 year ago

@zsloan @fredmanglis I do not have an account, thus am using the platform not logged in. I still experience the issue in certian situations.

For example: I searched for the gene "smarcal1" in the general search bar and now can choose the specific record from the list to add to a collection. However, should I go to read more on the trait data site and want to add it to any collection, it crashes again and gives me the error.

This is the link of the record i tried to work with: https://genenetwork.org/show_trait?trait_id=10347254&dataset=INIA_Hyp_RMA_1110

zsloan commented 1 year ago

Thanks! That's a different situation in the code, but I should be able to fix it today since I imagine the cause is similar.

On Tue, Jul 11, 2023 at 3:44 AM Dow Glikman @.***> wrote:

@zsloan https://github.com/zsloan @fredmanglis https://github.com/fredmanglis I do not have an account, thus am using the platform not logged in. I still experience the issue in certian situations.

For example: I searched for the gene "smarcal1" in the general search bar and now can choose the specific record from the list to add to a collection. However, should I go to read more on the trait data site and want to add it to any collection, it crashes again and gives me the error.

This is the link of the record i tried to work with: https://genenetwork.org/show_trait?trait_id=10347254&dataset=INIA_Hyp_RMA_1110

— Reply to this email directly, view it on GitHub https://github.com/genenetwork/genenetwork2/issues/798#issuecomment-1630406771, or unsubscribe https://github.com/notifications/unsubscribe-auth/AANQJGG2AGIGXWUNRWV7HOLXPUHAVANCNFSM6AAAAAA2EL33U4 . You are receiving this because you were mentioned.Message ID: @.***>

zsloan commented 1 year ago

Trait page submission to collections should also be fixed now. Let me know if there's any other situation where adding to collection isn't working; there have been a number of changes lately so other similar issues might exist.