Incorrect documentation will lead to scrambled trait submission.

[rupertoverall]

Trait submission for GN2 (via https://genenetwork.org/submit_trait) links to a page of example formats (https://gn1.genenetwork.org/RIsample.html). The information on this page is incorrect and will result in scrambled trait data being uploaded. Specifically, the order of the strains (for BXD at least) as quoted is not the order used by GN. This is easy to test by simply uploding the example trait and observing that the value for C57BL/6 has changed from missing ('X') to 6.717.

[zsloan]

Ah, I'll see if I can update this for BXD at least; those pages are just really out of date. At some point we need to just move them to GN2.

On Wed, Apr 10, 2024, 8:59 AM Rupert Overall @.***> wrote:

Trait submission for GN2 (via https://genenetwork.org/submit_trait) links to a page of example formats (https://gn1.genenetwork.org/RIsample.html). The information on this page is incorrect and will result in scrambled trait data being uploaded. Specifically, the order of the strains (for BXD at least) as quoted is not the order used by GN. This is easy to test by simply uploding the example trait and observing that the value for C57BL/6 has changed from missing ('X') to 6.717.

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[rupertoverall]

The correct order is easy to get: just pull down any random trait from the desired cross - so perhaps the examples page is not even needed (it may also be not so hard to dynamically generate).