Add option for no correction to RTE

geneontology / amigo

AmiGO is the public interface for the Gene Ontology.

http://amigo.geneontology.org

BSD 3-Clause "New" or "Revised" License

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Add option for no correction to RTE #175

Closed kltm closed 9 years ago

kltm commented 9 years ago

This is from http://jira.geneontology.org/browse/GO-754

The idea is to add a "none" correction, in addition to the currently locked-in "bonferroni". This is fairly easy to do: add as an option and reintroduce the "Advanced" link.

kltm commented 9 years ago

Pinging on @mugitty.

kltm commented 9 years ago

Trying with this URL:

http://pantherdb.org/webservices/go/overrep.jsp?ontology=biological_process&input=P31946%0AP62258%0AQ04917%0AP61981%0AP31947%0AP27348%0AP63104%0AQ96QU6&species=HUMAN&correction=none&format=html

The results seem to show that Bonferroni was used even with the "correction" parameter set to "none". Is my usage correct here?

kltm commented 9 years ago

Looks like it works, but upstream is checking the form variable.

mugitty commented 9 years ago

Fixed!