search

geneontology / amigo

AmiGO is the public interface for the Gene Ontology.
http://amigo.geneontology.org
BSD 3-Clause "New" or "Revised" License
29 stars 17 forks source link

The noctua model meta index in GOlr needs to contain the actual models #306

Closed kltm closed 8 years ago

kltm commented 8 years ago

Currently, after figuring out what models we want, we have no way to get the JSON out of GOlr without repetition--models are saved in every item in metadata/model-ann-config.yaml, and not at all in metadata/noctua-model-meta-config.yaml.

The shortest path here would be to add the field and let epione get it out of the newer models it possible. Longer term, we'll need to make sure that the pipeline provides these, possibly by loading another document type (will talk with @hdietze).

We'll need this to help drive external displays simply and without repetition.

kltm commented 8 years ago

Besides a schema change, the bulk of the work here will happen in geneontology/noctua.

kltm commented 8 years ago

Before closure, I've promised to update: https://github.com/geneontology/noctua-repl/blob/master/scripts/find-models-by-gene.js

kltm commented 8 years ago

As a step towards this model ID information has been added to the JSON in geneontology/minerva#37.

kltm commented 8 years ago

I'll need to touch all noctua models before this can be completely cleared.