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geneontology / amigo

AmiGO is the public interface for the Gene Ontology.
http://amigo.geneontology.org
BSD 3-Clause "New" or "Revised" License
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Display options showing all direct annotations to any member of ortholog set #355

Open mellybelly opened 8 years ago

mellybelly commented 8 years ago

I'd like to be able to visualize all the direct annotations to any member of a gene ortholog set. Currently, I can search for a gene, such as this search: http://amigo.geneontology.org/amigo/search/bioentity?q=sall1 and filter for direct annotations. I can see the GO terms in the filter, but I can't easily see which ones are associated with which species' gene. Perhaps a graph-based or ontology-smart gridded display might be useful?

I am sure you all have discussed this elsewhere, apologies for any duplication.

kltm commented 8 years ago

Noting: http://tomodachi.berkeleybop.org/amigo/search/annotation?q=*:*&fq=panther_family_label:%22zinc%20finger%20protein%20pthr23233%22&sfq=document_category:%22annotation%22 http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23233 As well as (now defunt) internal PANTHER tree viewer from Mitch.