Closed pgaudet closed 5 years ago
This is an upstream issue with db-xrefs.yaml in go-site/: there is no linkable KEGG information for AmiGO to use.
this is where we got to when we looked into this https://github.com/pombase/website/issues/763
so there is a file MF-> KEGG http://current.geneontology.org/ontology/external2go/kegg2go
@kltm
Who added this ?
Isn't this what you need ?
Thanks, Pascale
@pgaudet No, this is the wrong namespace--we need something for KEGG
.
I figure it out - this is an ontology problem, the prefix was wrong. I opened a new ticket. https://github.com/geneontology/go-ontology/issues/17506
Links now working !
At least from GO:0008948
http://amigo.geneontology.org/amigo/term/GO:0008948
There is no link to the KEGG reaction.
Should be https://www.genome.jp/dbget-bin/www_bget?rn:R00217
Thanks, Pascale