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geneontology / amigo

AmiGO is the public interface for the Gene Ontology.
http://amigo.geneontology.org
BSD 3-Clause "New" or "Revised" License
29 stars 17 forks source link

Raise the term number cap in the Matrix tool #621

Open ValWood opened 3 years ago

ValWood commented 3 years ago

@cmungall @kltm I know I asked this before, but is it possible to increase the number of terms we can add to the matrix tool? @pgaudet @RLovering and I are trying to improve the generic GO slim. Putting the terms into the matrix tool is a great way to assess the modularity (reduced overlap between slim terms). At present we have too many terms:

ask_seth_Screenshot 2021-09-17 at 18 48 51
kltm commented 3 years ago

@ValWood Honestly, I'm not sure if I remember this specifically from before; poking around a little isn't turning up much.

About how many would you need? Unfortunately, without rewriting a whole bunch of the core here, there is not a lot of flexibility--the code is unfortunately tweaked with a lot of hard-coded values in a library I'm not particularly familiar with anymore. That said, I may be able to do something like increase the base canvas size or double the density without much additional work, depending on what your expected needs are.

ValWood commented 3 years ago

We can let you know the final number once we have the slim set It is likely to be around 70-75 ball-park for process. cheers, Val

ValWood commented 3 years ago

I went hunting for the old ticket but I couldn't find it anywhere...