Add gorel.obo slims to repo

geneontology / annotation_extensions

Documentation, tickets & usage reports for annotation extension relations.

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Add gorel.obo slims to repo #37

Open dosumis opened 9 years ago

dosumis commented 9 years ago

gorel.obo has many more relations on it than are used by curators. For curator reference, it would be very useful to have an obo format slim that only contains sanctioned AE relations. This can be achieved by subsetting on display_for_curators. Other subsets, which roughly classify by usage, might be useful, but are not essential.

Cc @cmungall

hdietze commented 9 years ago

The following things are required:

[ ] add a target for the gorel slims to the Makefile (ontology/extensions/Makefile)
[ ] do initial commit to SVN
[ ] update (Jenkins job)[http://build.berkeleybop.org/job/build-go-relations/]

dosumis commented 9 years ago

OK. I'll give that a go then.

dosumis commented 9 years ago

add a target for the gorel slims to the Makefile (ontology/extensions/Makefile)

Is there an owltools command for generating slims, or should I use obo-grep.pl ?

hdietze commented 9 years ago

the owltools command is: --extract-subset SUBSET "Extract a subset (aka slim) from an ontology, storing subset in place of existing ontology"