Create and test Noctua developer deployment documentation

[kltm]

Create and test documentation for a developer with little devops background to be able to:

• Deploy to a fresh instance at a new random domain for testing/development of software (minerva, barista, noctua, workbenches, and necessary GOlrs/AmiGOs)
• Ensure that logging and push-to-GitHub works properly
• Deploy a fresh instance with security updates, etc.
• Update SOPs for migration to use this setup

[kltm]

Also see https://github.com/geneontology/noctua_app_stack (from main description in https://github.com/geneontology/project-management/issues/95).