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geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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Review external2go mappings #2056

Open vanaukenk opened 6 years ago

vanaukenk commented 6 years ago

The QAQC group will be reviewing the external2go mappings that exist here:

http://viewvc.geneontology.org/viewvc/GO-SVN/trunk/external2go/

to determine:

  1. Are the mappings still being used for annotation?

  2. Who is responsible for maintaining the mappings?

  3. Who is responsible for applying the mappings?

kltm commented 5 years ago

@vanaukenk Noting similarity to https://github.com/geneontology/go-site/issues/996 ; would you prefer work to be done in one or the other location?

vanaukenk commented 5 years ago

@kltm - No strong preference. I'm fine with continuing in go-site as there seems to be more detail there.

kltm commented 5 years ago

Moving work to https://github.com/geneontology/go-site/issues/996

pgaudet commented 5 years ago

(Reopening - These were in fact two different tickets. )

How can we know if a mapping is being used ? I think we can query the GO database and GOA; but I don't know if we can find out whether other people use them; right ? @vanaukenk @kltm Do you have suggestions ?