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geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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PTN000799655 - PTHR10048 - platelet activation #2238

Closed vanaukenk closed 5 years ago

vanaukenk commented 5 years ago

Hi,

Can you please take a look at the propagation of GO:0030168 'platelet activation' in PTN000799655.

We are getting an annotation to 'platelet activation' for C. elegans age-1 but C. elegans does not have platelets.

Thx.

vanaukenk commented 5 years ago

We may also need to re-evaluate the annotation to GO:006468 'protein phosphorylation'.

@hdrabkin @ukemi - do you still think the original annotations to PI3Ks from PMID:15192701 are okay? They are quite old.

hdrabkin commented 5 years ago

As far as I can tell they seem to be coming in from PAINT in 2017

vanaukenk commented 5 years ago

@hdrabkin I am looking at this page, for example, at MGI:

http://www.informatics.jax.org/go/marker/MGI:1206581

where I see an IDA annotation to protein phosphorylation from PMID:15192701

hdrabkin commented 5 years ago

Ok, did not notice; and because of that the other Pi3Ks are getting the IBA from Panther?

vanaukenk commented 5 years ago

Yes, it looks that way. Thx.

ukemi commented 5 years ago

I see the ones from MGI in our interface. I will check it out. They look suspicious.

hdrabkin commented 5 years ago

So it appears the paper shows "inhibition of either PI3K or Akt prevents the PS1-dependent Akt phosphorylation' ; not that PI3K is directly doing the Akt phosphorylation. So regulation of?

ukemi commented 5 years ago

Agreed. It is a downstream effect.

ukemi commented 5 years ago

causally-upstream, but important to capture the take-home message of the paper.

hdrabkin commented 5 years ago

I can fix now or you?

ukemi commented 5 years ago

Go ahead and fix. You're right, the authors argue that it is regulatory.

ukemi commented 5 years ago

Would be a nice one to model (hint hint).

hdrabkin commented 5 years ago

Done; other fish to fry for model (PRO)