IPR002197/ Q9US09 FP - Githubissues

geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.

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IPR002197/ Q9US09 FP #33

Closed gocentral closed 9 years ago

gocentral commented 20 years ago

Q9US09 = S pombe btn1 which is the homologue of the battenin family protein.

It has a false positive Interpro mapping to IPR002197 which is Helix-turn-helix, Fis-type, and pulling in a GO mapping to transcription factor.

Not sure why this mapping becuase the 'IPR003492 Batten's disease protein Cln3' covers the entire protein?

cheers

Val

Reported by: ValWood

Original Ticket: "geneontology/annotation-issues/33":https://sourceforge.net/p/geneontology/annotation-issues/33

gocentral commented 20 years ago

milestone: --> InterPro

Original comment by: mah11

gocentral commented 20 years ago

assigned_to: nobody --> orchard

Original comment by: mah11

gocentral commented 19 years ago

Logged In: YES user_id=545117

Hi Val

Entry has been given false_positive status (it was caused by a PRINTs pattern which may need some further looking at). Proteins can be hit by mutiple patterns so the fact that IPR003492 hits the protein does not prevent IPR002197 from doing so as well. Sandra

Original comment by: orchard

gocentral commented 19 years ago

status: open --> closed

Original comment by: orchard