Review annotations to GO:1900368 regulation of post-transcriptional gene silencing by RNA

[pgaudet]

Please review annotations to GO:1900368 regulation of post-transcriptional gene silencing by RNA & children

Note that these terms will not be obsoleted but there may be better terms to annotate to.

Annotations are here: https://docs.google.com/spreadsheets/d/17EeBMWxDACRi76-zY6Pyb8khjydIFN8CCJ8Lle_DmJY/edit#gid=0

Remaining annotations 2023-09-01 Contributor | (Assigned by) CACAO | 2 FlyBase | 8 MGI | 12 RGD | 2 TAIR | 12 WB | 7

[sramachand]

ZFIN done.

[pfey03]

@pgaudet will GO:0060967 negative regulation of gene silencing stay? And GO:0060966 regulation of gene silencing by RNA and positive and negative regulation stay?

replacing our annotation with GO:0060967 would b e more correct anyway (It's an old annotation) - Thanks!

[pgaudet]

Hi @pfey03 I think the term you are looking for is 'GO:1900369 negative regulation of post-transcriptional gene silencing by RNA' (the paper clearly mentions post-transcriptional)

[pfey03]

@pgaudet does that term stay? I thought this will be obsoleted

Review GO:1900368 regulation of post-transcriptional gene silencing by RNA is on top

[pgaudet]

Hi Petra, just reviewing this with @colinlog , we suggest you change this annotation to GO:1900369 'negative regulation of post-transcriptional gene silencing by regulatory ncRNA'

Thanks, Pascale

[pfey03]

@pgaudet done - from tomorrow I'm at Dicty meeting and on my way to and from until 1. September.

[uliboehme]

GeneDB (VEuPathDB) done.

[pgaudet]

UniProt checked. Most annotations were OK but some were changed. Useful terms:

• negative regulation of post-transcriptional gene silencing by regulatory ncRNA
• negative regulation of DNA methylation-dependent heterochromatin formation
• negative regulation of miRNA-mediated gene silencing
• positive regulation of miRNA transcription

[pgaudet]

Remaining annotations 2023-09-01 Contributor | (Assigned by) CACAO | 2 FlyBase | 8 MGI | 12 RGD | 2 TAIR | 12 WB | 7

Please let me knos if you need help reviewing them.

Thanks, Pascale

[hattrill]

FB done

[LiNiMGI]

MGI done.

[gthayman]

RGD done.

[lreiser]

TAIR done

[suzialeksander]

done