Check annotations to signaling involved in x

[pgaudet]

The proposal has been made to obsolete terms with the pattern 'signaling involved in x', see https://github.com/geneontology/go-ontology/issues/25766

Note that it is possible that some terms here are valid; please review and reannotate if this can be done with an extension; otherwise please let us know why you cannot do it.

ID	Term label
GO:1901527	abscisic acid-activated signaling pathway involved in stomatal movement
GO:0000754	adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion
GO:0086030	adenylate cyclase-activating adrenergic receptor signaling pathway involved in cardiac muscle relaxation
GO:0086023	adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process
GO:0086024	adenylate cyclase-activating adrenergic receptor signaling pathway involved in positive regulation of heart rate
GO:0140200	adenylate cyclase-activating adrenergic receptor signaling pathway involved in regulation of heart rate
GO:0086096	adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process
GO:0086102	adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate
GO:0086098	angiotensin-activated signaling pathway involved in heart process
GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning
GO:0061317	canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
GO:0061310	canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development
GO:0061316	canonical Wnt signaling pathway involved in heart development
GO:0044338	canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation
GO:0061293	canonical Wnt signaling pathway involved in mesonephric nephron development
GO:0061292	canonical Wnt signaling pathway involved in mesonephros development
GO:0061290	canonical Wnt signaling pathway involved in metanephric kidney development
GO:1904954	canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation
GO:0044336	canonical Wnt signaling pathway involved in negative regulation of apoptotic process
GO:0044335	canonical Wnt signaling pathway involved in neural crest cell differentiation
GO:0060823	canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
GO:0044339	canonical Wnt signaling pathway involved in osteoblast differentiation
GO:0044337	canonical Wnt signaling pathway involved in positive regulation of apoptotic process
GO:0061315	canonical Wnt signaling pathway involved in positive regulation of cardiac muscle cell proliferation
GO:0061324	canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation
GO:0044329	canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion
GO:0044328	canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration
GO:0044334	canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition
GO:0003267	canonical Wnt signaling pathway involved in positive regulation of secondary heart field cardioblast proliferation
GO:0044330	canonical Wnt signaling pathway involved in positive regulation of wound healing
GO:0044340	canonical Wnt signaling pathway involved in regulation of cell proliferation
GO:0044343	canonical Wnt signaling pathway involved in regulation of type B pancreatic cell proliferation
GO:1905474	canonical Wnt signaling pathway involved in stem cell proliferation
GO:0061291	canonical Wnt signaling pathway involved in ureteric bud branching
GO:1905114	cell surface receptor signaling pathway involved in cell-cell signaling
GO:0061311	cell surface receptor signaling pathway involved in heart development
GO:0003385	cell-cell signaling involved in amphid sensory organ development
GO:0086019	cell-cell signaling involved in cardiac conduction
GO:0045168	cell-cell signaling involved in cell fate commitment
GO:0060995	cell-cell signaling involved in kidney development
GO:0060495	cell-cell signaling involved in lung development
GO:0060764	cell-cell signaling involved in mammary gland development
GO:0061210	cell-cell signaling involved in mesonephros development
GO:0072204	cell-cell signaling involved in metanephros development
GO:0060673	cell-cell signaling involved in placenta development
GO:0039016	cell-cell signaling involved in pronephros development
GO:0021937	cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation
GO:0060830	ciliary receptor clustering involved in smoothened signaling pathway
GO:0021808	cytosolic calcium signaling involved in initiation of cell movement in glial-mediated radial cell migration
GO:1905197	endocannabinoid signaling pathway involved in retrograde trans-synaptic signaling
GO:1905129	endocannabinoid signaling pathway involved in trans-synaptic signaling
GO:0003134	endodermal-mesodermal cell signaling involved in heart induction
GO:0086101	endothelin receptor signaling pathway involved in heart process
GO:0060802	epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification
GO:1905251	epidermal growth factor receptor signaling pathway involved in heart process
GO:0060507	epidermal growth factor receptor signaling pathway involved in lung development
GO:0022026	epidermal growth factor signaling pathway involved in forebrain neuron fate commitment
GO:0061111	epithelial-mesenchymal cell signaling involved in lung development
GO:0060738	epithelial-mesenchymal signaling involved in prostate gland development
GO:0021939	extracellular matrix-granule cell signaling involved in regulation of granule cell precursor proliferation
GO:0038096	Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0021875	fibroblast growth factor receptor signaling pathway involved in forebrain neuroblast division
GO:0021899	fibroblast growth factor receptor signaling pathway involved in forebrain neuron fate commitment
GO:0061313	fibroblast growth factor receptor signaling pathway involved in heart development
GO:0003135	fibroblast growth factor receptor signaling pathway involved in heart induction
GO:0035603	fibroblast growth factor receptor signaling pathway involved in hemopoiesis
GO:0060499	fibroblast growth factor receptor signaling pathway involved in lung induction
GO:0060595	fibroblast growth factor receptor signaling pathway involved in mammary gland specification
GO:0035602	fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow cell
GO:0060825	fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
GO:0035607	fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development
GO:0035604	fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow
GO:0003268	fibroblast growth factor receptor signaling pathway involved in regulation of secondary heart field cardioblast proliferation
GO:0090243	fibroblast growth factor receptor signaling pathway involved in somitogenesis
GO:0021907	fibroblast growth factor receptor signaling pathway involved in spinal cord anterior/posterior pattern formation
GO:2000699	fibroblast growth factor receptor signaling pathway involved in ureteric bud formation
GO:0086093	G protein-coupled acetylcholine receptor signaling pathway involved in heart process
GO:0086033	G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate
GO:1904065	G protein-coupled acetylcholine receptor signaling pathway involved in positive regulation of acetylcholine secretion, neurotransmission
GO:1904066	G protein-coupled receptor signaling pathway involved in dauer larval development
GO:1903554	G protein-coupled receptor signaling pathway involved in defense response to Gram-negative bacterium
GO:0086103	G protein-coupled receptor signaling pathway involved in heart process
GO:1904068	G protein-coupled receptor signaling pathway involved in social behavior
GO:2000701	glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation
GO:0021811	growth factor signaling initiating cell movement involved in cerebral cortex radial glia guided migration
GO:1901528	hydrogen peroxide mediated signaling pathway involved in stomatal movement
GO:0002433	immune response-regulating cell surface receptor signaling pathway involved in phagocytosis
GO:0014815	initiation of skeletal muscle satellite cell activation by growth factor signaling, involved in skeletal muscle regeneration
GO:0099107	ion channel regulator activity involved in G protein-coupled receptor signaling pathway
GO:0022025	leukemia inhibitory factor signaling pathway involved in forebrain neuron fate commitment
GO:0035471	luteinizing hormone signaling pathway involved in ovarian follicle development
GO:0060783	mesenchymal smoothened signaling pathway involved in prostate gland development
GO:0060493	mesenchymal-endodermal cell signaling involved in lung induction
GO:0060496	mesenchymal-epithelial cell signaling involved in lung development
GO:0060739	mesenchymal-epithelial cell signaling involved in prostate gland development
GO:0060521	mesenchymal-epithelial cell signaling involved in prostate induction
GO:0003132	mesodermal-endodermal cell signaling involved in heart induction
GO:0061142	mesothelial-mesenchymal cell signaling involved in early lung development
GO:0021838	motogenic signaling involved in interneuron migration from the subpallium to the cortex
GO:0021837	motogenic signaling involved in postnatal olfactory bulb interneuron migration
GO:0000766	negative adaptation of signaling pathway by response to pheromone involved in pheromone-induced unidirectional conjugation
GO:0140199	negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process
GO:0140194	negative regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process
GO:1901296	negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
GO:2000080	negative regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation
GO:1905067	negative regulation of canonical Wnt signaling pathway involved in heart development
GO:0072336	negative regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation
GO:0060829	negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
GO:1905240	negative regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
GO:1905283	negative regulation of epidermal growth factor receptor signaling pathway involved in heart process
GO:1905450	negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis
GO:2000314	negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
GO:2000703	negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation
GO:2000734	negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation
GO:1900176	negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
GO:1900146	negative regulation of nodal signaling pathway involved in determination of left/right asymmetry
GO:1902367	negative regulation of Notch signaling pathway involved in somitogenesis
GO:2000140	negative regulation of octopamine signaling pathway involved in response to food
GO:1901621	negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0021914	negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:2000057	negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis
GO:2000054	negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0003308	negative regulation of Wnt signaling pathway involved in heart development
GO:0021810	neurotransmitter signaling initiating cell movement, involved in cerebral cortex radial glia guided migration
GO:0021809	neurotrophic factor signaling initiating cell movement, involved in cerebral cortex radial glia guided migration
GO:1900164	nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
GO:0038107	nodal signaling pathway involved in determination of left/right asymmetry
GO:0061341	non-canonical Wnt signaling pathway involved in heart development
GO:1905438	non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation
GO:0061314	Notch signaling involved in heart development
GO:0060853	Notch signaling pathway involved in arterial endothelial cell fate commitment
GO:0060227	Notch signaling pathway involved in camera-type eye photoreceptor fate commitment
GO:0021876	Notch signaling pathway involved in forebrain neuroblast division
GO:0021880	Notch signaling pathway involved in forebrain neuron fate commitment
GO:0003137	Notch signaling pathway involved in heart induction
GO:2000796	Notch signaling pathway involved in negative regulation of venous endothelial cell fate commitment
GO:0003270	Notch signaling pathway involved in regulation of secondary heart field cardioblast proliferation
GO:1902359	Notch signaling pathway involved in somitogenesis
GO:0071935	octopamine signaling pathway involved in response to food
GO:0086099	phospholipase C-activating angiotensin-activated signaling pathway involved in heart process
GO:0140196	positive regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process
GO:0140195	positive regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process
GO:1901197	positive regulation of calcium-mediated signaling involved in cellular response to calcium ion
GO:1901196	positive regulation of calcium-mediated signaling involved in cellular response to salt stress
GO:1901297	positive regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
GO:2000081	positive regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation
GO:1905068	positive regulation of canonical Wnt signaling pathway involved in heart development
GO:0072381	positive regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation
GO:1905241	positive regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
GO:1905284	positive regulation of epidermal growth factor receptor signaling pathway involved in heart process
GO:1905451	positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis
GO:2000315	positive regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
GO:2000704	positive regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation
GO:2000735	positive regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation
GO:0086095	positive regulation of IKACh channel activity by G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate
GO:1900224	positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
GO:0035481	positive regulation of Notch signaling pathway involved in heart induction
GO:2000141	positive regulation of octopamine signaling pathway involved in response to food
GO:1902772	positive regulation of phosphorelay signal transduction system involved in hydrogen peroxide mediated signaling pathway
GO:0086094	positive regulation of ryanodine-sensitive calcium-release channel activity by adrenergic receptor signaling pathway involved in positive regulation of cardiac muscle contraction
GO:2000764	positive regulation of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis
GO:1901622	positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:2000055	positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0099108	potassium channel activator activity involved in G protein-coupled receptor signaling pathway
GO:0010578	regulation of adenylate cyclase activity involved in G protein-coupled receptor signaling pathway
GO:0140192	regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process
GO:0140193	regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process
GO:1901295	regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
GO:2000079	regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation
GO:1905066	regulation of canonical Wnt signaling pathway involved in heart development
GO:0072335	regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation
GO:0060827	regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
GO:1905239	regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
GO:0061342	regulation of cell adhesion involved in heart morphogenesis by non-canonical Wnt signaling pathway
GO:1905282	regulation of epidermal growth factor receptor signaling pathway involved in heart process
GO:1905449	regulation of Fc-gamma receptor signaling pathway involved in phagocytosis
GO:2000313	regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
GO:2000702	regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation
GO:2000733	regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation
GO:1900175	regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
GO:1900145	regulation of nodal signaling pathway involved in determination of left/right asymmetry
GO:0035480	regulation of Notch signaling pathway involved in heart induction
GO:1902366	regulation of Notch signaling pathway involved in somitogenesis
GO:2000139	regulation of octopamine signaling pathway involved in response to food
GO:1901620	regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:2000056	regulation of Wnt signaling pathway involved in digestive tract morphogenesis
GO:2000053	regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0003307	regulation of Wnt signaling pathway involved in heart development
GO:0060498	retinoic acid receptor signaling pathway involved in lung bud formation
GO:0060824	retinoic acid receptor signaling pathway involved in neural plate anterior/posterior pattern formation
GO:0035576	retinoic acid receptor signaling pathway involved in pronephric field specification
GO:0034671	retinoic acid receptor signaling pathway involved in pronephros anterior/posterior pattern specification
GO:0090242	retinoic acid receptor signaling pathway involved in somitogenesis
GO:0021908	retinoic acid receptor signaling pathway involved in spinal cord anterior/posterior pattern formation
GO:0060895	retinoic acid receptor signaling pathway involved in spinal cord dorsal/ventral patterning
GO:0021774	retinoic acid receptor signaling pathway involved in ventral spinal cord interneuron specification
GO:2001266	Roundabout signaling pathway involved in axon guidance
GO:2001283	Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell
GO:1902287	semaphorin-plexin signaling pathway involved in axon guidance
GO:1900220	semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis
GO:1902286	semaphorin-plexin signaling pathway involved in dendrite guidance
GO:1902285	semaphorin-plexin signaling pathway involved in neuron projection guidance
GO:0071527	semaphorin-plexin signaling pathway involved in outflow tract morphogenesis
GO:2000305	semaphorin-plexin signaling pathway involved in regulation of photoreceptor cell axon guidance
GO:0060831	smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0003435	smoothened signaling pathway involved in growth plate cartilage chondrocyte development
GO:0060506	smoothened signaling pathway involved in lung development
GO:0021938	smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation
GO:0003271	smoothened signaling pathway involved in regulation of secondary heart field cardioblast proliferation
GO:0021776	smoothened signaling pathway involved in spinal cord motor neuron cell fate specification
GO:0021775	smoothened signaling pathway involved in ventral spinal cord interneuron specification
GO:0021910	smoothened signaling pathway involved in ventral spinal cord patterning
GO:0044345	stromal-epithelial cell signaling involved in prostate gland development
GO:0060869	transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission
GO:0060851	vascular endothelial growth factor receptor signaling pathway involved in lymphatic endothelial cell fate commitment
GO:1902378	VEGF-activated neuropilin signaling pathway involved in axon guidance
GO:0060833	Wnt signaling pathway involved in animal/vegetal axis specification
GO:0044333	Wnt signaling pathway involved in digestive tract morphogenesis
GO:0044332	Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0021874	Wnt signaling pathway involved in forebrain neuroblast division
GO:0003306	Wnt signaling pathway involved in heart development
GO:0061289	Wnt signaling pathway involved in kidney development
GO:0060593	Wnt signaling pathway involved in mammary gland specification
GO:1904953	Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation
GO:0090011	Wnt signaling pathway involved in primitive streak formation
GO:0021922	Wnt signaling pathway involved in regulation of cell proliferation in dorsal spinal cord
GO:0090244	Wnt signaling pathway involved in somitogenesis
GO:0035659	Wnt signaling pathway involved in wound healing, spreading of epidermal cells
GO:0021881	Wnt-activated signaling pathway involved in forebrain neuron fate commitment

[pgaudet]

• InterPro:IPR016806 COP9 signalosome complex, subunit 9, fungi > GO:adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion ; GO:0000754
• InterPro:IPR039316 CLAVATA3/ESR (CLE)-related protein 25/26 > GO:cell-cell signaling involved in cell fate commitment ; GO:0045168
• InterPro:IPR039617 CLAVATA3/ESR (CLE)-related protein > GO:cell-cell signaling involved in cell fate commitment ; GO:0045168
• InterPro:IPR044962 CLV3/ESR signal peptide family > GO:cell-cell signaling involved in cell fate commitment ; GO:0045168

[pgaudet]

Annotations are here: https://docs.google.com/spreadsheets/d/1dPgq7nbfx5Bq8g9EMLlXKIWxfIMLjjGixhWSssSAYT0/edit#gid=0

Impacted groups:

assigned_by | number of EXP

ARUK-UCL | 17 BHF-UCL | 74 CACAO | 3 CGD | 1 FlyBase | 13 MGI | 121 ParkinsonsUK-UCL | 12 RGD | 8 SGD | 32 TAIR | 12 UniProt | 45 WB | 13 Xenbase | 1 ZFIN | 55   |  

[pgaudet]

@jlewsmith @sarach06 @blazaropinto

Sorry I am unable to assign everyone (GH limits the number of assignees)

[EricaBakker]

Completed the ones assigned to TAIR.

[dsiegele]

I checked the three annotations assigned to CACAO. Only one annotation was in Protein2GO, and I replaced GO:0009738 'abscisic acid-activated signaling pathway involved in stomatal movement' with GO:0032879 regulation of localization.

Can someone please help me figure out where the other two annotations were pulled from? Thank you!

The annotations that I can't find are:

[pgaudet]

I see these in P2GO

[dsiegele]

Hi Pascale, sorry for the bother. I don't know why I didn't see these annotations yesterday. It must be computer gremlins. :-) I replaced GO:1901527 with GO:0090333 regulation of stomatal closure and changed the relation to acts_upstream_of_or_within. Thank you!

Debby

[hattrill]

FB done

[vanaukenk]

WB done

[RLovering]

All UCL annotations listed in the spreadsheet have been completed apart from the ones where a revision of the ontology is required. Plus there were quite a few annotations missing from the spreadsheet so I have edited the ones I found (I have added a few extra tabs trying to track these). I guess any remaining ones will appear in the P2G error report in the future

[sramachand]

ZFIN done

[sarach06]

Hi Pascale, Thank you very much for this and apologies for my slow reply. I checked these four InterPro entries and removed the terms. These changes will be visible in InterPro 96.0. Best wishes, Sara

[srengel]

i think the SGD ones are done. it's super hard to do the annotation review in Noctua, hard to make sure i'm editing the correct thing, etc. that's why i say i THINK the SGD ones are done.

[pgaudet]

Ready 2023-10-31

• [ ] GO:0021808 cytosolic calcium signaling involved in initiation of cell movement in glial-mediated radial cell migration
• [ ] GO:1905241 positive regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
• [ ] GO:0044339 canonical Wnt signaling pathway involved in osteoblast differentiation
• [ ] GO:0061324 canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation
• [ ] GO:1900176 negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
• [ ] GO:1900164 nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
• [ ] GO:0044334 canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition
• [ ] GO:1900224 positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
• [ ] GO:1900146 negative regulation of nodal signaling pathway involved in determination of left/right asymmetry
• [ ] GO:0140196 positive regulation of adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process
• [ ] GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
• [ ] GO:0035481 positive regulation of Notch signaling pathway involved in heart induction
• [ ] GO:0044340 canonical Wnt signaling pathway involved in regulation of cell proliferation
• [ ] GO:0003306 Wnt signaling pathway involved in heart development
• [ ] GO:2000057 negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis
• [ ] GO:0044335 canonical Wnt signaling pathway involved in neural crest cell differentiation
• [ ] GO:2000764 positive regulation of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis
• [ ] GO:0086094 positive regulation of ryanodine-sensitive calcium-release channel activity by adrenergic receptor signaling pathway involved in positive regulation of cardiac muscle contraction
• [ ] GO:0044338 canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation
• [ ] GO:1901296 negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
• [ ] GO:0061317 canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
• [ ] GO:0021914 negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
• [ ] GO:0140194 negative regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process
• [ ] GO:1902378 VEGF-activated neuropilin signaling pathway involved in axon guidance
• [ ] GO:1900220 semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis
• [ ] GO:1902285 semaphorin-plexin signaling pathway involved in neuron projection guidance
• [ ] GO:1905283 negative regulation of epidermal growth factor receptor signaling pathway involved in heart process
• [ ] GO:0086098 angiotensin-activated signaling pathway involved in heart process
• [ ] GO:0060825 fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
• [ ] GO:2000313 regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
• [ ] GO:0021910 smoothened signaling pathway involved in ventral spinal cord patterning
• [ ] GO:0000754 adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion
• [ ] GO:0061316 canonical Wnt signaling pathway involved in heart development
• [ ] GO:0002433 immune response-regulating cell surface receptor signaling pathway involved in phagocytosis
• [ ] GO:2001283 Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell
• [ ] GO:2000305 semaphorin-plexin signaling pathway involved in regulation of photoreceptor cell axon guidance
• [ ] GO:0021938 smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation
• [ ] GO:0021874 Wnt signaling pathway involved in forebrain neuroblast division
• [ ] GO:0060595 fibroblast growth factor receptor signaling pathway involved in mammary gland specification
• [ ] GO:0060738 epithelial-mesenchymal signaling involved in prostate gland development
• [ ] GO:0044336 canonical Wnt signaling pathway involved in negative regulation of apoptotic process
• [ ] GO:0021775 smoothened signaling pathway involved in ventral spinal cord interneuron specification
• [ ] GO:0021776 smoothened signaling pathway involved in spinal cord motor neuron cell fate specification
• [ ] GO:0090244 Wnt signaling pathway involved in somitogenesis
• [ ] GO:0060496 mesenchymal-epithelial cell signaling involved in lung development
• [ ] GO:0090242 retinoic acid receptor signaling pathway involved in somitogenesis
• [ ] GO:0060764 cell-cell signaling involved in mammary gland development
• [ ] GO:0044337 canonical Wnt signaling pathway involved in positive regulation of apoptotic process
• [ ] GO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterning
• [ ] GO:0060739 mesenchymal-epithelial cell signaling involved in prostate gland development
• [ ] GO:0035471 luteinizing hormone signaling pathway involved in ovarian follicle development
• [ ] GO:0003270 Notch signaling pathway involved in regulation of secondary heart field cardioblast proliferation
• [ ] GO:0061310 canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development
• [ ] GO:1901620 regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning
• [ ] GO:0060830 ciliary receptor clustering involved in smoothened signaling pathway
• [ ] GO:1901297 positive regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
• [ ] GO:1901622 positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning
• [ ] GO:0003271 smoothened signaling pathway involved in regulation of secondary heart field cardioblast proliferation
• [ ] GO:0086101 endothelin receptor signaling pathway involved in heart process
• [ ] GO:1904953 Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation
• [ ] GO:0008138 protein tyrosine/serine/threonine phosphatase activity
• [ ] GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning
• [ ] GO:1904066 G protein-coupled receptor signaling pathway involved in dauer larval development
• [ ] GO:1903554 G protein-coupled receptor signaling pathway involved in defense response to Gram-negative bacterium
• [ ] GO:1905067 negative regulation of canonical Wnt signaling pathway involved in heart development
• [ ] GO:2000053 regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
• [ ] GO:0061341 non-canonical Wnt signaling pathway involved in heart development
• [ ] GO:0060827 regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
• [ ] GO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis
• [ ] GO:0060823 canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
• [ ] GO:2000056 regulation of Wnt signaling pathway involved in digestive tract morphogenesis
• [ ] GO:1900145 regulation of nodal signaling pathway involved in determination of left/right asymmetry
• [ ] GO:1902366 regulation of Notch signaling pathway involved in somitogenesis
• [ ] GO:0021899 fibroblast growth factor receptor signaling pathway involved in forebrain neuron fate commitment
• [ ] GO:0003307 regulation of Wnt signaling pathway involved in heart development
• [ ] GO:1905066 regulation of canonical Wnt signaling pathway involved in heart development

[RLovering]

All UCL annotations changed apart from the ones about cell-cell signaling which you suggested we would need to look more closely at the ontology before these are revised.

Let me know if a decision has been made for these and I will follow through

Best

Ruth

[lreiser]

Apparently TAIR is done

[suzialeksander]

According to the spreadsheet, only @gthayman and UniProt @Antonialock remain

[RLovering]

presumably the cell-to-cell signaling aspect still needs to be resolved, although I may have forgotten what what done now

[gthayman]

RGD done.

[pgaudet]

@RLovering

presumably the cell-to-cell signaling aspect still needs to be resolved,

Indeeed, this one is not sorted yet