Review annotations to regulation of transcription involved in x

[pgaudet]

There are very few annotations remaining to close https://github.com/geneontology/go-ontology/issues/12739

assigned_by

BHF-UCL | 13 BHF-UCL- ParkinsonsUK-UCL | 6 CGD | 9 FlyBase | 2 MGI | 7 SGD | 1 TAIR | 2 UniProt | 8 WB | 22

• GO:2000820 | 'negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation'
• GO:1901522 | 'positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus'
• GO:1902097 | 'positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium'
• GO:1904081 | 'positive regulation of transcription from RNA polymerase II promoter involved in neuron differentiation'
• GO:2000763 | 'positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process'
• GO:0006990 | 'positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response'

I'd like to go ahead with the obsoletion by the end of August, unless there are objections.

[RLovering]

created spreadsheet for UCL annotations here https://docs.google.com/spreadsheets/d/1bukxejuINOZg7e0C5Q8atzFLWV3fO-xSFpChArowaEY/edit?usp=sharing

[jlewsmith]

Hi Pascale,

I'm not finding CGD assignments on the spreadsheet - what am I missing?

Best, Jodi

Jodi Lew-Smith Ph.D. Senior Biocuration Scientist | Candida Genome Database Department of Genetics Stanford University School of Medicine Stanford, CA 94305 @.***

---

From: pgaudet @.> Sent: Friday, July 28, 2023 2:24 PM To: geneontology/go-annotation @.> Cc: Jodi Lew-Smith @.>; Assign @.> Subject: Re: [geneontology/go-annotation] Review annotations to regulation of transcription involved in x (Issue #4694)

Assigned #4694https://github.com/geneontology/go-annotation/issues/4694 to @jlewsmithhttps://github.com/jlewsmith.

— Reply to this email directly, view it on GitHubhttps://github.com/geneontology/go-annotation/issues/4694#event-9951008640, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AWBKZHNNY4OJFISVP76LXB3XSP7UZANCNFSM6AAAAAA23UQOPI. You are receiving this because you were assigned.Message ID: @.***>

[LiNiMGI]

@pgaudet is there a spreadsheet for this ticket? I only found 4 annotations to GO:1901522 (changed already) from MGI in Noctua...thanks!

[srengel]

looks like the SGD one has already been addressed.

[Antonialock]

I got 23 annotations for UniProt. They should all be fixed now.

[vanaukenk]

WB is done.

[hattrill]

FB done

[pgaudet]

Apologies, here's the spreadsheet https://docs.google.com/spreadsheets/d/1FjL3O0ylo9UIm_jp9-Y21zfXOQDdV9T06JTjcKp73Wc/edit#gid=0

[LiNiMGI]

MGI done.

[RLovering]

UCL done

[pgaudet]

@jlewsmith Did you find your annotations with the spreadsheet? https://docs.google.com/spreadsheets/d/1FjL3O0ylo9UIm_jp9-Y21zfXOQDdV9T06JTjcKp73Wc/edit#gid=0

[jlewsmith]

Yes - they're done now.