Review annotations to GO:0052163 'symbiont defense to host-produced nitric oxide'

[pgaudet]

Dear all,

We propose to obsolete GO:0052163 'symbiont defense to host-produced nitric oxide'

see https://github.com/geneontology/go-ontology/issues/25988

[pgaudet]

2 CGD annotations and 1 Reactome model need to be reviewed, see https://docs.google.com/spreadsheets/d/1yAL2TcRAm4mRhM5hpRggxEBM_XRrU6fadyQ8MnlfOz8/edit#gid=0

[deustp01]

1 Reactome model

Indeed we use the term. What is the suggested action - is there a proposed replacement? (Sorry - i think I missed an earlier step in the discussion that covered this.) If there is none, we could simply remove the annotation without any real loss of information. Please advise.

[pgaudet]

Hi @deustp01

In the spreadsheet I suggest replacement by cellular detoxification of nitrogen compound but looking more closely, you probably want 'symbiont-mediated detoxification of host-generated reactive oxygen species'?

[deustp01]

Reactome fixed - change will become visible with December 2023 release

[jlewsmith]

CGD done

---

From: pgaudet @.> Sent: Thursday, September 14, 2023 10:58 AM To: geneontology/go-annotation @.> Cc: Jodi Lew-Smith @.>; Assign @.> Subject: Re: [geneontology/go-annotation] Review annotations to GO:0052163 'symbiont defense to host-produced nitric oxide' (Issue #4742)

Assigned #4742https://github.com/geneontology/go-annotation/issues/4742 to @jlewsmithhttps://github.com/jlewsmith.

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[jlewsmith]

CGD done