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geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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Review annotations to some intracellular signaling pathways #4853

Open pgaudet opened 7 months ago

pgaudet commented 7 months ago

Dear all,

The proposal has been made to obsolete

GO:0038008 TRAF-mediated signal transduction (https://github.com/geneontology/go-ontology/issues/26498) GO:0019932 second-messenger-mediated signaling (https://github.com/geneontology/go-ontology/issues/26503) GO:0071848 positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling and GO:0071847 TNFSF11-mediated signaling pathway (https://github.com/geneontology/go-ontology/issues/26499) GO:0061359 regulation of Wnt signaling pathway by Wnt protein secretion (https://github.com/geneontology/go-ontology/issues/26404) GO:0007227 signal transduction downstream of smoothened (https://github.com/geneontology/go-ontology/issues/26496)

pgaudet commented 7 months ago

Annotation spreadsheet is here: https://docs.google.com/spreadsheets/d/1ySyfPL64AA55EqjoWSvV8H0-T2VUB4IpPPvHEbG4O6Q/edit#gid=0

Group  Number of EXP
BHF-UCL 5 (Done)
MGI 9 (Done)
RGD 1
UniProt 1 (Done)
WB 1
ZFIN 2
RLovering commented 7 months ago

I assume that the child terms for these terms are not included in the obsoletion? As UCL has lots of annotations to review if the child terms are included

pgaudet commented 7 months ago

Which child terms are you referring to?

RLovering commented 7 months ago

Phew ;)

LiNiMGI commented 7 months ago

MGI done.

vanaukenk commented 6 months ago

WB done

sramachand commented 3 months ago

ZFIN done