geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
BSD 3-Clause "New" or "Revised" License
34 stars 10 forks source link

SP_KW:KW-0902 #523

Closed gocentral closed 9 years ago

gocentral commented 16 years ago

O14066 is mapping to two-component signal transduction system (phosphorelay)

I can't work out the basis for this one.

Reported by: ValWood

Original Ticket: "geneontology/annotation-issues/523":https://sourceforge.net/p/geneontology/annotation-issues/523

gocentral commented 16 years ago

Original comment by: mah11

gocentral commented 16 years ago

Logged In: YES user_id=837342 Originator: NO

Two-component regulatory system is a new keyword in this entry which has been mapped to the GO ID GO:0000160 two-component signal transduction system (phosphorelay).

Val - I've just worked out whats happening. You need to switch to using beta.uniprot.org (or http://www.expasy.ch/). The old UniProt site is not being updated regularly with new UniProt releases (I know, its a strange situation) - so when you look at O14066, you are seeing the entry version last changed on the 11-SEP-2007, whereas the beta/expasy sites are showing the most recent version - with the extra keywords attached.

Emily

Original comment by: edimmer

gocentral commented 16 years ago

Original comment by: edimmer

gocentral commented 16 years ago

Logged In: YES user_id=516865 Originator: YES

Hi Emily,

I reilise these are new keywords, and not visible in http://www.ebi.uniprot.org

but for this entry, this keyword is not applicable.

val

Original comment by: ValWood

gocentral commented 16 years ago

Logged In: YES user_id=516865 Originator: YES

For this one, it isn't a 2 component signal transducer. I can't add anything else becasue we don't knopw much about this protein. It contains an EF hand and an ENTH domain. Neither of these correlates with 2 component signal transducer.

Original comment by: ValWood

gocentral commented 13 years ago

removed so closing

Original comment by: ValWood

gocentral commented 13 years ago

Original comment by: ValWood