The proposal has been made to REORGANIZE respiratory chain complex terms to obsolete terms that specify a specific cellular location (e.g. plasma membrane, mitochondrion) and replace them by the generic, parent terms.
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
GO:0045284 plasma membrane fumarate reductase complex
GO:0042653 mitochondrial respiratory chain complex I, membrane segment (rename to "respiratory chain complex I, membrane segment")
GO:0042652 mitochondrial respiratory chain complex I, peripheral segment (rename to "respiratory chain complex I, peripheral segment")
GO:0005747 mitochondrial respiratory chain complex I
GO:0045272 plasma membrane respiratory chain complex I
GO:0045281succinate dehydrogenase complex
GO:0045257 succinate dehydrogenase complex (ubiquinone)
GO:0045282 plasma membrane succinate dehydrogenase complex
GO:0045258 plasma membrane succinate dehydrogenase complex (ubiquinone)
GO:0045274 plasma membrane respiratory chain complex II
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
GO:0005750 mitochondrial respiratory chain complex III
GO:0045276 plasma membrane respiratory chain complex III
GO:0005751 mitochondrial respiratory chain complex IV
GO:0045278 plasma membrane respiratory chain complex IV
GO:0045320 chloroplast proton-transporting ATP synthase complex
GO:0005753 mitochondrial proton-transporting ATP synthase complex
GO:0045260 plasma membrane proton-transporting ATP synthase complex
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0045262 plasma membrane proton-transporting ATP synthase complex, catalytic core F(1)
GO:0033174 chloroplast proton-transporting ATP synthase complex, catalytic core CF(1)
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core
GO:0045268 plasma membrane proton-transporting ATP synthase, catalytic core
GO:0005756 mitochondrial proton-transporting ATP synthase, central stalk
GO:0045270 plasma membrane proton-transporting ATP synthase, central stalk
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0045264 plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)
GO:0033175 chloroplast proton-transporting ATP synthase complex, coupling factor CF(o)
GO:0000274 mitochondrial proton-transporting ATP synthase, stator stalk
GO:0045266 plasma membrane proton-transporting ATP synthase, stator stalk
GO:0070469 respirasome
GO:0005746 mitochondrial respirasome
GO:0070470 plasma membrane respirasome
Dear all,
The proposal has been made to REORGANIZE respiratory chain complex terms to obsolete terms that specify a specific cellular location (e.g. plasma membrane, mitochondrion) and replace them by the generic, parent terms.
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) GO:0045284 plasma membrane fumarate reductase complex GO:0042653 mitochondrial respiratory chain complex I, membrane segment (rename to "respiratory chain complex I, membrane segment") GO:0042652 mitochondrial respiratory chain complex I, peripheral segment (rename to "respiratory chain complex I, peripheral segment") GO:0005747 mitochondrial respiratory chain complex I GO:0045272 plasma membrane respiratory chain complex I GO:0045281succinate dehydrogenase complex GO:0045257 succinate dehydrogenase complex (ubiquinone) GO:0045282 plasma membrane succinate dehydrogenase complex GO:0045258 plasma membrane succinate dehydrogenase complex (ubiquinone) GO:0045274 plasma membrane respiratory chain complex II GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) GO:0005750 mitochondrial respiratory chain complex III GO:0045276 plasma membrane respiratory chain complex III GO:0005751 mitochondrial respiratory chain complex IV GO:0045278 plasma membrane respiratory chain complex IV GO:0045320 chloroplast proton-transporting ATP synthase complex GO:0005753 mitochondrial proton-transporting ATP synthase complex GO:0045260 plasma membrane proton-transporting ATP synthase complex GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) GO:0045262 plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) GO:0033174 chloroplast proton-transporting ATP synthase complex, catalytic core CF(1) GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core GO:0045268 plasma membrane proton-transporting ATP synthase, catalytic core GO:0005756 mitochondrial proton-transporting ATP synthase, central stalk GO:0045270 plasma membrane proton-transporting ATP synthase, central stalk GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) GO:0045264 plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) GO:0033175 chloroplast proton-transporting ATP synthase complex, coupling factor CF(o) GO:0000274 mitochondrial proton-transporting ATP synthase, stator stalk GO:0045266 plasma membrane proton-transporting ATP synthase, stator stalk GO:0070469 respirasome GO:0005746 mitochondrial respirasome GO:0070470 plasma membrane respirasome
see https://github.com/geneontology/go-ontology/issues/27253
Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/122_7Gjjvm9wfCIdNzlyhhcx_AS56tRvJB_aoV6w0ya8/edit#gid=0
Impacted groups: ~AspGD | 2~ DONE CACAO | 3 ~CAFA | 25~ DONE CGD | 2 ComplexPortal | 75 ~EcoCyc | 35~ DONE EcoliWiki | 1 ~FlyBase | 47~ DONE GeneDB | 52 IntAct | 4 MGI | 19 ~ParkinsonsUK-UCL | 1~ DONE ~PomBase | 12~ DONE ~RGD | 22~ DONE ~SGD | 77~ DONE TAIR | 151 ~UniProt | 298~ DONE WB | 4 ~ZFIN | 1~ DONE
Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule) InterPro:IPR006721 ATP synthase, F1 complex, epsilon subunit, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) ; GO:0000275 InterPro:IPR020971 ATP synthase, F1 beta subunit > GO:mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) ; GO:0000275 InterPro:IPR036742 ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) ; GO:0000275 InterPro:IPR001421 ATP synthase protein 8, metazoa > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR006808 ATP synthase, F0 complex, subunit G, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR008386 ATP synthase, F0 complex, subunit E, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR008387 ATP synthase-coupling factor 6, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR008688 ATP synthase, F0 complex, subunit B/MI25 > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR008689 ATP synthase, F0 complex, subunit D, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR013837 ATP synthase, F0 complex, subunit B > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR019711 ATP synthase, F0 complex, subunit H > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR019727 ATP synthase, F0 complex, subunit F, mitochondria, fungi > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR036204 ATP synthase-coupling factor 6 superfamily, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR036228 ATP synthase, F0 complex, subunit D superfamily, mitochondrial > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR039017 ATP synthase protein 8, mammals > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 UniRule:UR000977770 > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 UniRule:UR001348758 > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 UniRule:UR001478771 > GO:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ; GO:0000276 InterPro:IPR003177 Cytochrome c oxidase subunit VIIa, metazoa > GO:mitochondrial respirasome ; GO:0005746 InterPro:IPR008432 Cytochrome c oxidase subunit 5c > GO:mitochondrial respirasome ; GO:0005746 InterPro:IPR008433 Cytochrome C oxidase, subunit VIIB > GO:mitochondrial respirasome ; GO:0005746 UniRule:UR000356810 > GO:mitochondrial respirasome ; GO:0005746 InterPro:IPR015828 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR016551 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, metazoa > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR016668 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR019174 NADH dehydrogenase 1, beta subcomplex, subunit 6 > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR026192 NADH-ubiquinone oxidoreductase 1 subunit C1 > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR026193 NADH-ubiquinone oxidoreductase flavoprotein 3 > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR026626 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR026627 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, animal type > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR044980 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, plant/fungi > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR045299 NDUFA6, LYR domain > GO:mitochondrial respiratory chain complex I ; GO:0005747 UniRule:UR000168457 > GO:mitochondrial respiratory chain complex I ; GO:0005747 UniRule:UR001527787 > GO:mitochondrial respiratory chain complex I ; GO:0005747 InterPro:IPR034573 Succinate dehydrogenase subunit 7, mitochondrial > GO:mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) ; GO:0005749 InterPro:IPR034574 Succinate dehydrogenase subunit 6, mitochondrial > GO:mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) ; GO:0005749 InterPro:IPR044963 Succinate dehydrogenase subunit 4, mitochondrial > GO:mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) ; GO:0005749 InterPro:IPR003197 Cytochrome b-c1 complex subunit 7 > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR003422 Cytochrome b-c1 complex, subunit 6 > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR004205 Cytochrome b-c1 complex subunit 8 > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR008027 Cytochrome b-c1 complex subunit 9 > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR015089 Cytochrome b-c1 complex subunit 10 > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR019182 Cytochrome b-c1 complex subunit 10, fungi > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR020101 Cytochrome b-c1 complex subunit 8, plants > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR036544 Cytochrome b-c1 complex subunit 7 superfamily > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR036642 Cytochrome b-c1 complex subunit 8 superfamily > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR036656 Cytochrome b-c1 complex subunit 9 superfamily > GO:mitochondrial respiratory chain complex III ; GO:0005750 UniRule:UR001528774 > GO:mitochondrial respiratory chain complex III ; GO:0005750 UniRule:UR001590792 > GO:mitochondrial respiratory chain complex III ; GO:0005750 InterPro:IPR001349 Cytochrome c oxidase, subunit VIa > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR002124 Cytochrome c oxidase, subunit Vb > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR003177 Cytochrome c oxidase subunit VIIa, metazoa > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR003204 Cytochrome c oxidase, subunit Va/VI > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR003205 Cytochrome c oxidase, subunit 8 > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR004202 Cytochrome c oxidase subunit VIIc > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR004203 Cytochrome c oxidase subunit IV family > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR004204 Cytochrome c oxidase subunit 7e/7s > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR014367 Cytochrome c oxidase subunit VII, budding yeast > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR018507 Cytochrome c oxidase, subunit VIa, conserved site > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR036539 Cytochrome c oxidase, subunit VIIa superfamily > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR036545 Cytochrome c oxidase, subunit Va/VI superfamily > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR036548 Cytochrome c oxidase, subunit 8 superfamily > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR036636 Cytochrome c oxidase subunit VIIc superfamily > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR036639 Cytochrome c oxidase subunit IV superfamily > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR036972 Cytochrome c oxidase, subunit Vb superfamily > GO:mitochondrial respiratory chain complex IV ; GO:0005751 UniRule:UR001590796 > GO:mitochondrial respiratory chain complex IV ; GO:0005751 UniRule:UR001590798 > GO:mitochondrial respiratory chain complex IV ; GO:0005751 UniRule:UR001591772 > GO:mitochondrial respiratory chain complex IV ; GO:0005751 UniRule:UR001591774 > GO:mitochondrial respiratory chain complex IV ; GO:0005751 InterPro:IPR009125 ATP synthase membrane subunit K > GO:mitochondrial proton-transporting ATP synthase complex ; GO:0005753 InterPro:IPR004677 Cytochrome c oxidase cbb3-type, subunit I > GO:plasma membrane respiratory chain complex IV ; GO:0045278 InterPro:IPR014314 Succinate dehydrogenase, cytochrome b556 subunit > GO:succinate dehydrogenase complex ; GO:0045281 HAMAP:MF_00708 > GO:plasma membrane fumarate reductase complex ; GO:0045284 HAMAP:MF_00709 > GO:plasma membrane fumarate reductase complex ; GO:0045284 UniRule:UR000065683 > GO:plasma membrane fumarate reductase complex ; GO:0045284 UniRule:UR000065693 > GO:plasma membrane fumarate reductase complex ; GO:0045284 InterPro:IPR020101 Cytochrome b-c1 complex subunit 8, plants > GO:respirasome ; GO:0070469 UniProtKB-KW:KW-0679 Respiratory chain > GO:respirasome ; GO:0070469 UniRule:UR000000668 > GO:respirasome ; GO:0070469 UniRule:UR000285107 > GO:respirasome ; GO:0070469 UniRule:UR000668782 > GO:respirasome ; GO:0070469 UniRule:UR001478752 > GO:respirasome ; GO:0070469