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geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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Review annotations to GO:0019516 lactate oxidation #5299

Open ValWood opened 1 week ago

ValWood commented 1 week ago

Dear all,

The proposal has been made to obsolete GO:0019516 lactate oxidation see https://github.com/geneontology/go-ontology/issues/27096

Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/1i2WesPAaKjdbMnflTsjc1zh2dFR6a2Ti6jE2gP_ul2s/edit?gid=0#gid=0

Impacted groups: UniProt 1 MGI 1 EcoCyc 3

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)

GO:0019516 | unirule2go | UniRule:UR000079107 > GO:lactate oxidation ; GO:0019516 GO:0019516 | unirule2go | UniRule:UR000160008 > GO:lactate oxidation ; GO:0019516 GO:0019516 | unirule2go | UniRule:UR000635130 > GO:lactate oxidation ; GO:0019516 GO:0019516 | interpro2go | InterPro:IPR004452 4Fe-4S binding protein > GO:lactate oxidation ; GO:0019516 GO:0019516 | interpro2go | InterPro:IPR012256 D-lactate dehydrogenase > GO:lactate oxidation ; GO:0019516 GO:0019516 | hamap2go | HAMAP:MF_01559 > GO:lactate oxidation ; GO:0019516 GO:0019516 | hamap2go | HAMAP:MF_02092 > GO:lactate oxidation ; GO:0019516 GO:0019516 | hamap2go | HAMAP:MF_02103 > GO:lactate oxidation ; GO:0019516

Thanks.

LiNiMGI commented 1 week ago

MGI done.

blazaropinto commented 1 week ago

Thanks Val, I replaced the term with GO:0006089 in both entries. The changes will be available in the next InterPro release. Best, Beatriz

amandamackie commented 1 week ago

EcoCyc done

Antonialock commented 1 week ago

uniprot done