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Review annotations for bulk obsoletion of catalytic terms with UM-BBD mapping only, and no annotations #5303

Open pgaudet opened 3 months ago

pgaudet commented 3 months ago

See https://github.com/geneontology/go-ontology/issues/28261

GO:0004028 | 3-chloroallyl aldehyde dehydrogenase activity GO:0009389 | dimethyl sulfoxide reductase activity GO:0018547 | nitroglycerin reductase activity GO:0008785 | alkyl hydroperoxide reductase activity GO:0018641 | 6-hydroxy-3-methyl-2-oxo-1,2-dihydroquinoline 6-monooxygenase activity GO:0018742 | epoxide hydrolase B activity GO:0034824 | citronellyl-CoA dehydrogenase activity GO:0034820 | 4,9-DSHA hydrolase activity GO:0034556 | nitrobenzoate nitroreductase activity GO:0034832 | geranial dehydrogenase activity GO:0034930 | 1-hydroxypyrene sulfotransferase activity GO:0018446 | pinocarveol dehydrogenase activity GO:0018447 | chloral hydrate dehydrogenase activity GO:0018448 | hydroxymethylmethylsilanediol oxidase activity GO:0018450 | myrtenol dehydrogenase activity GO:0018451 | epoxide dehydrogenase activity GO:0018453 | 2-hydroxytetrahydrofuran dehydrogenase activity GO:0018469 | myrtenal dehydrogenase activity GO:0018470 | 4-hydroxybutaraldehyde dehydrogenase activity GO:0018472 | 1-hydroxy-2-naphthaldehyde dehydrogenase activity GO:0018473 | cis-2-methyl-5-isopropylhexa-2,5-dienal dehydrogenase activity GO:0018475 | trans-2-methyl-5-isopropylhexa-2,5-dienal dehydrogenase activity GO:0018486 | 2-butanone oxidase activity GO:0018487 | vanillate O-demethylase (anaerobic) activity GO:0018495 | 2-hydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity GO:0018496 | 2,6-dihydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity GO:0018497 | 1-chloro-2,2-bis(4-chlorophenyl)ethane dehydrogenase activity GO:0018499 | cis-2,3-dihydrodiol DDT dehydrogenase activity GO:0018500 | trans-9R,10R-dihydrodiolphenanthrene dehydrogenase activity GO:0018501 | cis-chlorobenzene dihydrodiol dehydrogenase activity GO:0018503 | trans-1,2-dihydrodiolphenanthrene dehydrogenase activity GO:0018508 | cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase activity GO:0018526 | 2-aminobenzoyl-CoA reductase activity GO:0018528 | iminodiacetate dehydrogenase activity GO:0018550 | tetrachloro-p-hydroquinone reductive dehalogenase activity GO:0018553 | 3-(2,3-dihydroxyphenyl)propionate 1,2-dioxygenase activity GO:0018585 | fluorene oxygenase activity GO:0018586 | mono-butyltin dioxygenase activity GO:0018588 | tri-n-butyltin dioxygenase activity GO:0018589 | di-n-butyltin dioxygenase activity GO:0018590 | methylsilanetriol hydroxylase activity GO:0018593 | 4-chlorophenoxyacetate monooxygenase activity GO:0018596 | dimethylsilanediol hydroxylase activity GO:0018598 | hydroxymethylsilanetriol oxidase activity GO:0018599 | 2-hydroxyisobutyrate 3-monooxygenase activity GO:0018686 | 6-hydroxy pseudo-oxynicotine monooxygenase activity GO:0018688 | DDT 2,3-dioxygenase activity GO:0018689 | naphthalene disulfonate 1,2-dioxygenase activity GO:0018703 | 2,4-dichlorophenoxyacetate dehalogenase activity GO:0018705 | 1,2-dichloroethene reductive dehalogenase activity GO:0018707 | 1-phenanthrol methyltransferase activity GO:0018715 | 9-phenanthrol UDP-glucuronosyltransferase activity GO:0018716 | 1-phenanthrol glycosyltransferase activity GO:0018717 | 9-phenanthrol glycosyltransferase activity GO:0018718 | 1,2-dihydroxy-phenanthrene glycosyltransferase activity GO:0018721 | trans-9R,10R-dihydrodiolphenanthrene sulfotransferase activity GO:0018722 | 1-phenanthrol sulfotransferase activity GO:0018723 | 3-phenanthrol sulfotransferase activity GO:0018724 | 4-phenanthrol sulfotransferase activity GO:0018725 | trans-3,4-dihydrodiolphenanthrene sulfotransferase activity GO:0018726 | 9-phenanthrol sulfotransferase activity GO:0018727 | 2-phenanthrol sulfotransferase activity GO:0018731 | 1-oxa-2-oxocycloheptane lactonase activity GO:0018734 | butyrolactone hydrolase activity GO:0018736 | 6-oxo-2-hydroxycyclohexane-1-carboxyl-CoA hydrolase activity GO:0018737 | 2-ketocyclohexane-1-carboxyl-CoA hydrolase activity GO:0018743 | phenanthrene-9,10-epoxide hydrolase (9R,10R-forming) activity GO:0018745 | epoxide hydrolase A activity GO:0018746 | phenanthrene-3,4-epoxide hydrolase activity GO:0018747 | phenanthrene-1,2-epoxide hydrolase activity GO:0018748 | iprodione amidohydrolase activity GO:0018749 | (3,5-dichlorophenylurea)acetate amidohydrolase activity GO:0018751 | 3,5-dichlorophenylcarboximide hydrolase activity GO:0018758 | 2,4-dihydroxy-6-(N'-ethyl)amino-1,3,5-triazine aminohydrolase activity GO:0018767 | 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase activity GO:0018769 | 2-hydroxy-6-oxoocta-2,4-dienoate hydrolase activity GO:0018770 | 6-oxo-2-hydroxy-7-(4'-chlorophenyl)-3,8,8-trichloroocta-2E,4E,7-trienoate hydrolase activity GO:0018776 | trans-chloroacrylic acid dehalogenase activity GO:0018780 | dichloroacetate halidohydrolase activity GO:0018781 | S-triazine hydrolase activity GO:0018782 | cis-chloroacrylic acid dehalogenase activity GO:0018791 | 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate decarboxylase activity GO:0018792 | bis(4-chlorophenyl)acetate decarboxylase activity GO:0018793 | 3,5-dibromo-4-hydroxybenzoate decarboxylase activity GO:0018794 | 2-hydroxyisobutyrate decarboxylase activity GO:0018795 | 2-hydroxy-2-methyl-1,3-dicarbonate decarboxylase activity GO:0018802 | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity GO:0018808 | trans-4-(1'-hydroxynaphth-2'-yl)-2-oxobut-3-enoate hydratase-aldolase activity GO:0018809 | E-phenylitaconyl-CoA hydratase activity GO:0018810 | trans-4-[2-(3-hydroxy)-thionaphthenyl]-2-oxo-3-butenoate hydratase activity GO:0018816 | 2-hydroxyisobutyrate dehydratase activity GO:0018825 | triethanolamine lyase activity GO:0018828 | halohydrin hydrogen-halide-lyase A activity GO:0018832 | halohydrin hydrogen-halide-lyase B activity GO:0018837 | 2-hydroxy-2H-benzo[h]chromene-2-carboxylate isomerase activity GO:0018854 | 3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity GO:0018857 | 2,4-dichlorobenzoate-CoA ligase activity GO:0018863 | phenanthrene-9,10-epoxide hydrolase (9S,10S-forming) activity GO:0034522 | cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene dehydrogenase activity GO:0034523 | 3-formylsalicylate oxidase activity GO:0034524 | 2-hydroxyisophthalate decarboxylase activity GO:0034525 | 1-naphthaldehyde dehydrogenase activity GO:0034527 | 1,2-dihydroxy-8-carboxynaphthalene dioxygenase activity GO:0034529 | 2-hydroxy-3-carboxy-benzalpyruvate hydratase-aldolase activity GO:0034531 | 2-hydroxy-4-hydroxymethylbenzalpyruvate hydratase-aldolase activity GO:0034533 | 1,2-dihydroxy-7-hydroxymethylnaphthalene dioxygenase activity GO:0034535 | 1,2-dihydroxy-8-methylnaphthalene dioxygenase activity GO:0034537 | 2-hydroxy-3-methylbenzalpyruvate hydratase-aldolase activity GO:0034538 | 3-methylsalicylaldehyde dehydrogenase activity GO:0034541 | dimethylarsinite methyltransferase activity GO:0034558 | technetium (VII) reductase activity GO:0034559 | bisphenol A hydroxylase B activity GO:0034561 | 1,2-bis(4-hydroxyphenyl)-2-proponol dehydratase activity GO:0034562 | 2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase activity GO:0034563 | 2,3-bis(4-hydroxyphenyl)-1,2-propanediol dioxygenase activity GO:0034564 | 4,4'-dihydroxy-alpha-methylstilbene dioxygenase activity GO:0034571 | 4'-(2-hydroxyisopropyl)phenylurea amidohydrolase activity GO:0034573 | didemethylisoproturon amidohydrolase activity GO:0034576 | N-isopropylacetanilide amidohydrolase activity GO:0034578 | limonene 8-hydratase activity GO:0034579 | (1-methylpentyl)succinate synthase activity GO:0034581 | 4-methyloct-2-enoyl-CoA hydratase activity GO:0034582 | 3-hydroxy-4-methyloctanoyl-CoA dehydrogenase activity GO:0034778 | 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA dehydrogenase activity GO:0034779 | 4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA hydrolase activity GO:0034780 | glyphosate dehydrogenase activity GO:0034781 | N-cyclohexylformamide amidohydrolase activity GO:0034782 | dimethylmalonate decarboxylase activity GO:0034783 | pivalate-CoA ligase activity GO:0034786 | 9-fluorenone-3,4-dioxygenase activity GO:0034787 | 1-hydro-1,1a-dihydroxy-9-fluorenone dehydrogenase activity GO:0034788 | 2,3-dihydroxy-2'-carboxybiphenyl 1,2-dioxygenase activity GO:0034789 | 2-hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate hydrolase activity GO:0034790 | 3,4-dihydroxy-3,4-dihydrofluorene dehydrogenase activity GO:0034792 | hypophosphite dioxygenase activity GO:0034793 | cyclopropanecarboxylate-CoA ligase activity GO:0034796 | adipate-CoA ligase activity GO:0034797 | fosfomycin 2-glutathione ligase activity GO:0034798 | fosfomycin 2-L-cysteine ligase activity GO:0034799 | dihydride TNP tautomerase activity GO:0034801 | 2,4-dinitrocyclohexanone hydrolase activity GO:0034804 | benzo(a)pyrene 11,12-epoxidase activity GO:0034805 | benzo(a)pyrene-trans-11,12-dihydrodiol dehydrogenase activity GO:0034807 | 4,5-dihydroxybenzo(a)pyrene methyltransferase activity GO:0034809 | benzo(a)pyrene-cis-4,5-dihydrodiol dehydrogenase activity GO:0034816 | anthracene 9,10-dioxygenase activity GO:0034817 | cis-9,10-dihydroanthracene-9,10-diol dehydrogenase activity GO:0034821 | citronellol dehydrogenase activity GO:0034822 | citronellal dehydrogenase activity GO:0034826 | 1,2-dihydroxy-1,2,5,6,7,8-hexyhadronaphthalene dehydrogenase activity GO:0034828 | 4-(2-oxocyclohexyl)-2-hydroxy-buta-2,4-dienoate hydrolase activity GO:0034829 | 2-hydroxydec-2,4-diene-1,10-dioate hydratase activity GO:0034831 | (R)-(-)-1,2,3,4-tetrahydronaphthol dehydrogenase activity GO:0034833 | geranylate CoA-transferase activity GO:0034837 | 2-mercaptobenzothiazole-cis-6,7-dihydrodiol dehydrogenase activity GO:0034838 | menthone dehydrogenase activity GO:0034839 | menth-2-enone hydratase activity GO:0034840 | 3-hydroxymenthone dehydrogenase activity GO:0034841 | mentha-1,3-dione-CoA ligase activity GO:0034842 | thiophene-2-carboxylate-CoA ligase activity GO:0034843 | 2-oxoglutaryl-CoA thioesterase activity GO:0034844 | naphthyl-2-methyl-succinate CoA-transferase activity GO:0034846 | naphthyl-2-methylene-succinyl-CoA lyase activity GO:0034847 | naphthyl-2-hydroxymethyl-succinyl-CoA dehydrogenase activity GO:0034848 | naphthyl-2-oxomethyl-succinyl-CoA succinyl transferase activity GO:0034849 | 2-naphthoate CoA-transferase activity GO:0034851 | 2,4,4-trimethyl-3-oxopentanoyl-CoA 2-C-propanoyl transferase activity GO:0034852 | 4,4-dimethyl-3-oxopentanal dehydrogenase activity GO:0034853 | 2,4,4-trimethyl-3-oxopentanoate decarboxylase activity GO:0034854 | 4,4-dimethyl-3-oxopentanoate decarboxylase activity GO:0034857 | 2-(methylthio)benzothiazole monooxygenase activity GO:0034858 | 2-hydroxybenzothiazole monooxygenase activity GO:0034859 | benzothiazole monooxygenase activity GO:0034862 | 2,6-dihydroxybenzothiazole monooxygenase activity GO:0034863 | 2,4,4-trimethyl-1-pentanol dehydrogenase activity GO:0034864 | 2,4,4-trimethylpentanal dehydrogenase activity GO:0034865 | 2,4,4-trimethylpentanoate-CoA ligase activity GO:0034866 | 2,4,4-trimethylpentanoyl-CoA dehydrogenase activity GO:0034867 | 2,4,4-trimethylpent-2-enoyl-CoA hydratase activity GO:0034868 | 2,4,4-trimethyl-3-hydroxypentanoyl-CoA dehydrogenase activity GO:0034869 | 2,4,4-trimethyl-3-oxopentanoyl-CoA thioesterase activity GO:0034870 | pinacolone 5-monooxygenase activity GO:0034871 | 1-hydroxy-4,4-dimethylpentan-3-one dehydrogenase activity GO:0034873 | thioacetamide S-oxygenase activity GO:0034874 | thioacetamide S-oxide S-oxygenase activity GO:0034876 | isonicotinic acid hydrazide hydrolase activity GO:0034877 | isonicotinate dehydrogenase activity GO:0034878 | 2-hydroxyisonicotinate dehydrogenase activity GO:0034879 | 2,3,6-trihydroxyisonicotinate decarboxylase activity GO:0034880 | citrazinate dehydrogenase activity GO:0034881 | citrazinate hydrolase activity GO:0034882 | cis-aconitamide amidase activity GO:0034885 | gamma-N-formylaminovinylacetate hydrolase activity GO:0034888 | endosulfan monooxygenase I activity GO:0034889 | endosulfan hemisulfate sulfatase activity GO:0034890 | endosulfan diol hydrolyase (cyclizing) activity GO:0034891 | endosulfan diol dehydrogenase activity GO:0034892 | endosulfan lactone lactonase activity GO:0034893 | N-nitrodimethylamine hydroxylase activity GO:0034897 | 4-(1-ethyl-1,4-dimethyl-pentyl)phenol monooxygenase activity GO:0034901 | endosulfan hydroxyether dehydrogenase activity GO:0034902 | endosulfan sulfate hydrolase activity GO:0034903 | endosulfan ether monooxygenase activity GO:0034904 | 5-chloro-2-oxopent-4-enoate hydratase activity GO:0034910 | 6-hydroxy-3-succinoylpyridine hydrolase activity GO:0034917 | 2-methylhex-2-enoyl-CoA hydratase activity GO:0034918 | 3-hydroxy-2-methylhexanoyl-CoA dehydrogenase activity GO:0034919 | butyryl-CoA 2-C-propionyltransferase activity GO:0034921 | cis-4,5-dihydroxy-4,5-dihydropyrene dehydrogenase activity GO:0034923 | phenanthrene-4,5-dicarboxylate decarboxylase activity GO:0034924 | cis-3,4-phenanthrenedihydrodiol-4-carboxylate dehydrogenase activity GO:0034925 | pyrene 4,5-monooxygenase activity GO:0034926 | pyrene-4,5-epoxide hydrolase activity GO:0034927 | pyrene 1,2-monooxygenase activity GO:0034928 | 1-hydroxypyrene 6,7-monooxygenase activity GO:0034929 | 1-hydroxypyrene 7,8-monooxygenase activity GO:0034931 | 1-hydroxypyrene methyltransferase activity GO:0034932 | 1-methoxypyrene 6,7-monooxygenase activity GO:0034933 | 1-hydroxy-6-methoxypyrene methyltransferase activity GO:0034939 | 5-hydroxypyrrole-2-carboxylate tautomerase activity GO:0034940 | 5-oxo-4,5-dihydropyrrole-2-carboxylate amidase activity GO:0034942 | cis-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity GO:0034943 | trans-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity GO:0034944 | 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA dehydrogenase activity GO:0034946 | 3-isopropylbut-3-enoyl-CoA thioesterase activity GO:0034947 | terephthalate decarboxylase activity GO:0034950 | phenylboronic acid monooxygenase activity GO:0034952 | malonate semialdehyde decarboxylase activity GO:0034953 | perillyl-CoA hydratase activity GO:0034957 | 3-nitrophenol nitroreductase activity

suzialeksander commented 2 months ago

Not all of these are obsolete:

GO:0004028 3-chloroallyl aldehyde dehydrogenase activity
GO:0009389 dimethyl sulfoxide reductase activity
GO:0008785 alkyl hydroperoxide reductase activity
GO:0034824 citronellyl-CoA dehydrogenase activity
GO:0034832 geranial dehydrogenase activity

All the rest of these terms have been obsoleted.