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geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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Review annotations to to GO:0019551 glutamate catabolic process to 2-oxoglutarate #5318

Open ValWood opened 1 week ago

ValWood commented 1 week ago

Dear all,

The proposal has been made to obsolete to GO:0019551 glutamate catabolic process to 2-oxoglutarate See: https://github.com/geneontology/go-ontology/issues/15331 (read from the bottom for the solution, it's long)

replace by 'consider' GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity

Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/19ZaY5OJ0iFYB4HN-sgn81RmCSZesVFaoc72D9z6bbks/edit?gid=0#gid=0

Impacted groups:

CGD 1 @jlewsmith MGI 2 @LiNiMGI PomBase 1 @ValWood RGD 2 @gthayman

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)

GO:0019551 | unirule2go | UniRule:UR000380776 @PedroRaposo 3 | GO:0019551 | metacyc2go | MetaCyc:GLUTAMATE-DEG1-PWY @amandamackie 4 | GO:0019551 | metacyc2go | MetaCyc:PWY-5766 @amandamackie 5 | GO:0019551 | interpro2go | InterPro:IPR007780 @blazaropinto 6 | GO:0019551 | interpro2go | InterPro:IPR016210 @blazaropinto 7 | GO:0019551 | interpro2go | InterPro:IPR028971 @blazaropinto

Thanks.

ValWood commented 1 week ago

CGD 1 @jlewsmith MGI 2 @LiNiMGI ~PomBase 1 @ValWood~ done RGD 2 @gthayman

gthayman commented 1 week ago

RGD done

amandamackie commented 1 week ago

I can't help with this issue. I'm an EcoCyc curator and have no involvement with metaCyc2go mapping.

ValWood commented 1 week ago

OK sorry. @pgaudet I can't find any info about metacyc mappings in the contacts file...

blazaropinto commented 1 week ago

Thank you Val, I've updated this term in the three entries and added GO:0006538 as BP GO term. The changes will be available in the next InterPro release. Best, Beatriz