Review annotations to glucuronoside metabolic/biosynthetic/catabolic/ process

[raymond91125]

Dear all,

The proposal has been made to obsolete GO:0019389 glucuronoside metabolic process GO:0019390 glucuronoside biosynthetic process GO:0019391 glucuronoside catabolic process

see https://github.com/geneontology/go-ontology/issues/28506. The biosynthetic and catabolic processes are MF's. Thus the metabolic process is unnecessary.

Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/1E5TBXr3jK1m5UcSqnzHMFXVXUvqDYf6GaMFeymN-7g4/edit?gid=0#gid=0

Impacted groups: RGD 1 BHF-UCL 1 EcoCyc 1 MGI 1

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: None.

Thanks.

[RLovering]

UCL done

[slaulederkind]

RGD finished

[amandamackie]

I've deleted the annotation in EcoCyc but enteric bacteria can use D-glucuronosides as a carbon source so we require a catabolic process GO term. Is there a suggested replacement term for GO:0019391 glucuronoside catabolic process?

[pgaudet]

Hi @amandamackie

Do you have a paper describing this? just so we can add a reference. If the process exists we'll keep the term. Right now it looked liked just a post-translational modification.

Thanks, Pascale

[raymond91125]

Perhaps this MetaCyc https://biocyc.org/pathway?orgid=META&id=GLUCUROCAT-PWY is relevant.

[pgaudet]

This looks like a real pathway - right @rozaru ? maybe we should un-obsolete the term (sorry!) and describe the pathway more precisely- we can include start and end with the description in MetaCyc. And please add the MetaCyc xref.

Thanks, Pascale

[LiNiMGI]

MGI done.