geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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PTN001441502 pombe probably false positive for this family #5385

Closed ValWood closed 2 months ago

ValWood commented 2 months ago

GO:0003682 | chromatin binding | IBA with PTN001441502 , Q96DN6 , Q9P267 GO:0005634 | nucleus | IBA with Q9P267 , Q96DN6 , PTN001441502

https://www.pombase.org/gene/SPBC21C3.14c

I used this to annotate the human ortholog, but now I believe it to be a PANTEHR false positive. This really looks like a cell surface protein (receptor or some cell surface molecule). It has a clear signal poptide prediction and what appears to be aa glycosylated repeat egion.

Its also quite different in length, and the AlphaFold structures appear to be very different. Could you take a look at the aligned region and see what you think.

marcfeuermann commented 2 months ago

This tree is indeed weird. Annotation reviewed and I sent a request to Panther to review the tree topology.