Review annotations to GO:0006487 protein N-linked glycosylation

[ValWood]

Dear all,

The proposal has been made to obsolete GO:0006487 protein N-linked glycosylation see https://github.com/geneontology/go-ontology/issues/28538

Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/1HbTjxgcsYSIYuoGDoOXtSaRHfBpHrllMgBLLgQsK1Mg/edit?gid=0#gid=0

Impacted groups:

4 ARUK-UCL (automatic migration) 1 AspGD (automatic migration) 1 CAFA (automatic migration) 11 CGD @jlewsmith (I'm not sure if you are in Protein2GO/ or Noctua ignore if you are) 21 ComplexPortal @sandraorchard 8 FlyBase (automatic migration) 17 MGI (automatic migration) 1 PINC (automatic migration) ~20 PomBase @ValWood~ DONE 42 SGD (automatic migration) ~11 TAIR @tberardini~ 1 TIGR (automatic migration) 48 UniProt (automatic migration) 5 WB (automatic migration) 4 ZFIN (automatic migration) 1 dictyBase (automatic migration)

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)

@blazaropinto InterPro:IPR006813 Glycosyl transferase, family 17 InterPro:IPR007915 Oligosaccharyltransferase complex subunit InterPro:IPR008814 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1 InterPro:IPR026116 Glycosyltransferase family 18 > GO:protein N-linked glycosylation ; GO:0006487 InterPro:IPR033895 UDP-GlcNAc-dolichyl-phosphate GlcNAc phosphotransferase > GO:protein N-linked glycosylation ; GO:0006487

@pedruzzi UniRule:UR000995774 UniRule:UR001230756 UniRule:UR001419784 UniRule:UR001590772 UniRule:UR001903758

@raymond91125 do you know who to tag for RESID? RESID:AA0151 RESID:AA0156 RESID:AA0327

Thanks.

[lreiser]

TAIR done

[sandraorchard]

Complex Portal done

[sarach06]

Hi Val, Thank you very much for this, I have removed the term from these entries. The changes will be available in the next InterPro release (102.0). Just a reminder, please add the InterPro tag to the issues so we don't miss them. Many thanks, Best wishes, Sara