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geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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Review annotations to GO:0003867 4-aminobutyrate transaminase activity #5434

Open raymond91125 opened 2 months ago

raymond91125 commented 2 months ago

Dear all,

The proposal has been made to obsolete GO:0003867 4-aminobutyrate transaminase activity see https://github.com/geneontology/go-ontology/issues/28802.

Annotations may consider GO:0034386 4-aminobutyrate:2-oxoglutarate transaminase activity -> EC:2.6.1.19 -> RHEA:23352 GO:0034387 4-aminobutyrate:pyruvate transaminase activity -> EC:2.6.1.96 -> RHEA:32263, RHEA:32267 (found in some plants)

Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/1STiv0lx5VaG82Phn7qdLHw2CNFCOwl1qy_xGtBQ-eDc/edit?gid=0#gid=0

Impacted groups: CACAO 4 CGD 1 EcoCyc 3 RGD 1 SGD 1 SGN 2 TAIR 1 UniProt 2

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule) InterPro:IPR004631 4-aminobutyrate aminotransferase, eukaryotic > GO:4-aminobutyrate transaminase activity ; GO:0003867 InterPro:IPR004632 4-aminobutyrate aminotransferase, bacterial > GO:4-aminobutyrate transaminase activity ; GO:0003867 Reactome:R-HSA-916855 > GO:4-aminobutyrate transaminase activity ; GO:0003867

Thanks.

deustp01 commented 2 months ago

Reactome annotation already fixed - #28802

amandamackie commented 2 months ago

EcoCyc done

pgaudet commented 2 months ago

UniProt done.

lreiser commented 2 months ago

TAIR done

sarach06 commented 2 months ago

Hi, I've replaced GO:0003867 with GO:0034386 in the InterPro entries you mentioned above. These changes will be visible in the next InterPro release, 102.0. Best, Sara

srengel commented 2 months ago

looks like the SGD one is already fixed.