geneontology / go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.
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GO:0006696 ergosterol biosynthetic process IBA with PTN000825284 #5530

Open ValWood opened 1 week ago

ValWood commented 1 week ago

GO:0006696 | ergosterol biosynthetic process | IBA with PTN000825284 , S000004821

erg12 https://www.pombase.org/gene/SPAC13G6.11c

erg12 is in the upstream pathway and is

farnesyl diphosphate biosynthetic process, mevalonate pathway isopentenyl diphosphate biosynthetic process, mevalonate pathway

ValWood commented 1 week ago

Also:

GO:0006696 ergosterol biosynthetic process IBA with S000005949 , PTN00105271 example issues erg10 https://www.pombase.org/gene/SPBC215.09c

GO:0006696 ergosterol biosynthetic process IBA with S000004442 , S000004540 , PTN000832055 example issues hmg1 https://www.pombase.org/gene/SPCC162.09c

GO:0006696 ergosterol biosynthetic process IBA with hcs1 , PTN000933803 , S000004595 GO_REF:0000033 example issues hcs1 https://www.pombase.org/gene/SPAC4F8.14c

GO:0006696 ergosterol biosynthetic process IBA with PTN000907895 , S000001233 GO_RE example issues erg9

~GO:0006696 ergosterol biosynthetic process IBA with CAL0000184383 , PTN001288334 , S000001114 example issues SPAC13G7.01c erg7 lanosterol synthase Erg7 https://www.pombase.org/gene/SPAC13G7.01c~. this one is ergosterol

GO:0006696 ergosterol biosynthetic process IBA with S000004833 , PTN001274236 example issues SPAC343.01c erg8 phosphomevalonate kinase Erg8 https://www.pombase.org/gene/SPAC343.01c

ValWood commented 1 week ago

This is the ergosterol pathway http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A66c7d41500002088

All the above are isprenoid which is upstream http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A662af8fa00000499

i.e.

pathway mevalonate